PlantSME Plant secondary metabolism enzyme database

Rhodiola crenulata (rhodiola_crenulata)

Imported from atlas release summary for Rhodiola crenulata.

1486
Candidate Protein Records
1104
Pathway-Level Records
2825
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 310 20 BAHD (138) View species results
Phenylpropanoid pathway 275 11 POD (128) View species results
Alkaloid pathway 201 19 NMT (36) View species results
Flavonoid pathway 137 11 UFGT (69) View species results
Rosmarinic acid pathway 95 7 C4H (36) View species results
Steroid pathway 86 10 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1052 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rcrescaffold1387080099180 Terpenoid GGPPS medium borderline
Rcrescaffold1391550141660 Terpenoid GGPPS medium borderline
Rcrescaffold45350259270 Terpenoid GGPPS medium borderline
Rcrescaffold56790272760 Terpenoid GGPPS medium borderline
Rcrescaffold171710187200 Terpenoid GPPS medium borderline
Rcrescaffold1383280058210 Terpenoid HDR/IspH high pass
Rcrescaffold558540271030 Terpenoid HDR/IspH low borderline
Rcrescaffold1390940131530 Terpenoid HDS/IspG high pass
Rcrescaffold1376270046690 Terpenoid HMGR medium pass
Rcrescaffold1386580095040 Terpenoid HMGR medium pass
Rcrescaffold1391550141570 Terpenoid HMGR medium pass
Rcrescaffold1421880176000 Terpenoid HMGR medium pass
Rcrescaffold199740200070 Terpenoid HMGR medium pass
Rcrescaffold45350259510 Terpenoid HMGR medium pass
Rcrescaffold532420268100 Terpenoid HMGR medium pass
Rcrescaffold63370282220 Terpenoid HMGR medium pass
Rcrescaffold88540308630 Terpenoid HMGR medium pass
Rcrescaffold1365010040770 Terpenoid HMGS medium pass
Rcrescaffold34810241330 Terpenoid HMGS medium pass
Rcrescaffold1357450035860 Terpenoid IDI medium pass
Rcrescaffold1383930060980 Terpenoid IDI medium pass
Rcrescaffold270020222860 Terpenoid IDI medium pass
Rcrescaffold60350278660 Terpenoid IDI low borderline
Rcrescaffold103650002820 Terpenoid MCT/IspD high pass
Rcrescaffold1383770060120 Terpenoid MCT/IspD low borderline
Rcrescaffold9440312100 Terpenoid MCT/IspD low borderline
Rcrescaffold2480217680 Terpenoid MDS/IspF high pass
Rcrescaffold1395220168800 Terpenoid MVD medium pass
Rcrescaffold1395450170560 Terpenoid MVD low borderline
Rcrescaffold434660257170 Terpenoid MVD medium pass
Rcrescaffold1385150079900 Terpenoid MVK low borderline
Rcrescaffold1391550141590 Terpenoid MVK low borderline
Rcrescaffold1391850146710 Terpenoid MVK medium pass
Rcrescaffold152270181190 Terpenoid MVK low borderline
Rcrescaffold21750206490 Terpenoid MVK medium pass
Rcrescaffold217620206990 Terpenoid MVK medium pass
Rcrescaffold217620207000 Terpenoid MVK medium pass
Rcrescaffold2930229120 Terpenoid MVK medium pass
Rcrescaffold64490285360 Terpenoid MVK low borderline
Rcrescaffold68020289850 Terpenoid MVK low borderline
Rcrescaffold69680292550 Terpenoid MVK medium pass
Rcrescaffold1391900147500 Terpenoid PMK high pass
Rcrescaffold1391900147510 Terpenoid PMK medium pass
Rcrescaffold64580285510 Terpenoid PMK low borderline
Rcrescaffold115390009180 Terpenoid TPS medium pass
Rcrescaffold115390009220 Terpenoid TPS medium pass
Rcrescaffold128720019440 Terpenoid TPS medium pass
Rcrescaffold128720019450 Terpenoid TPS medium pass
Rcrescaffold1305090023770 Terpenoid TPS medium pass
Rcrescaffold1305090023800 Terpenoid TPS medium pass