PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA10314 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA11314 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA11972 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA11997 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA11998 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA13308 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA13917 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA13918 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA15237 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA16588 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA16875 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA1715 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA1716 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA17619 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA17658 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA19370 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA19727 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA3105 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA3106 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA3108 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA4012 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA4013 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA456 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA5012 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA5013 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA651 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA653 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA7236 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA739 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA750 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA842 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9361 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9362 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9363 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9991 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9992 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9993 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9994 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9995 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA9997 Alkaloid 16OMT medium borderline
rhynchospora_breviuscula_mRNA4010 Alkaloid 6OMT_4OMT_SOMT medium pass
rhynchospora_breviuscula_mRNA4011 Alkaloid 6OMT_4OMT_SOMT medium pass
rhynchospora_breviuscula_mRNA10587 Alkaloid 7DLGT medium pass
rhynchospora_breviuscula_mRNA11217 Alkaloid 7DLGT low borderline
rhynchospora_breviuscula_mRNA11367 Alkaloid 7DLGT low borderline
rhynchospora_breviuscula_mRNA11485 Alkaloid 7DLGT low borderline
rhynchospora_breviuscula_mRNA11522 Alkaloid 7DLGT medium pass
rhynchospora_breviuscula_mRNA1283 Alkaloid 7DLGT low borderline
rhynchospora_breviuscula_mRNA12909 Alkaloid 7DLGT low borderline
rhynchospora_breviuscula_mRNA12911 Alkaloid 7DLGT low borderline