Rhynchospora breviuscula (rhynchospora_breviuscula)
/
Imported from atlas release summary for Rhynchospora breviuscula.
1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1461
Candidate Genes
C3'H/CYP98A
6.16%
C4H
6.07%
BAHD
5.08%
4CL
4.96%
POD
4.69%
T3O
4.07%
UGT
3.98%
UFGT
3.8%
Other Families
61.18%
More Families (94)
7DLGT
126
3.77%
IFS
113
3.38%
CYP76
102
3.05%
DWF4/CYP90B1
85
2.54%
F3H
78
2.33%
F3'H/CYP75B
69
2.06%
CSE
68
2.03%
BR6OX2/CYP85A2
68
2.03%
NMT
64
1.91%
PYKS
61
1.82%
CYP71
61
1.82%
STR
53
1.58%
CAD
47
1.41%
COMT
44
1.32%
SMT1/SMT2/SMT3
42
1.26%
TRI/TRII
41
1.23%
16OMT
40
1.2%
CHS
40
1.2%
H6H
38
1.14%
IFR
36
1.08%
CODM/T6ODM
35
1.05%
GS
35
1.05%
ANR
32
0.96%
LAC
31
0.93%
SGD
30
0.9%
HCT
29
0.87%
RAS
29
0.87%
PMT
28
0.84%
CAS
26
0.78%
CYP90D1
24
0.72%
TPS
23
0.69%
SLS
22
0.66%
T16H
22
0.66%
IO
21
0.63%
GES
21
0.63%
COR
20
0.6%
FNS
18
0.54%
CCR
17
0.51%
NCS
16
0.48%
TAT
16
0.48%
F3'5'H/CYP75A
15
0.45%
PAL
15
0.45%
CYP51G1
15
0.45%
AACT
13
0.39%
8HGO
11
0.33%
F5H/CYP84A
11
0.33%
7DLH
10
0.3%
G8O/G8H
9
0.27%
FPPS
9
0.27%
CNMT
8
0.24%
BBE
8
0.24%
CPD/CYP90A1
8
0.24%
LAMT
7
0.21%
BR6OX1/CYP85A1
7
0.21%
CCoAOMT
6
0.18%
CPR
6
0.18%
HPPR
6
0.18%
ROT3/CYP90C1
6
0.18%
DXS
6
0.18%
GGPPS
6
0.18%
MVD
6
0.18%
CYP719
5
0.15%
MPO
5
0.15%
CHI
5
0.15%
DFR
5
0.15%
MVK
5
0.15%
TYDC_DDC
4
0.12%
ANS/LDOX
4
0.12%
SQS/FDFT1
4
0.12%
SQE
4
0.12%
DET2
4
0.12%
HMGR
4
0.12%
MCT/IspD
4
0.12%
CYP80B1
3
0.09%
ISY
3
0.09%
TDC
3
0.09%
PMK
3
0.09%
6OMT_4OMT_SOMT
2
0.06%
FLS
2
0.06%
FK
2
0.06%
CMK/IspE
2
0.06%
HDR/IspH
2
0.06%
XMT_MXMT_DXMT
1
0.03%
ADC
1
0.03%
SMO1/SMO2
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
DWF1
1
0.03%
MDS/IspF
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
IDI
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 371 | 12 | POD (154) | View species results |
| Terpenoid pathway | 357 | 20 | BAHD (128) | View species results |
| Alkaloid pathway | 331 | 20 | 7DLGT (62) | View species results |
| Flavonoid pathway | 221 | 8 | UFGT (121) | View species results |
| Rosmarinic acid pathway | 123 | 7 | C4H (53) | View species results |
| Steroid pathway | 58 | 10 | SMT1/SMT2/SMT3 (28) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1221 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 228 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rhynchospora_breviuscula_mRNA10394 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA10494 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA10518 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA10519 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA10520 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA10521 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA1114 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA12851 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA17252 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA18899 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA2041 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA2057 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA24150 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA2644 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| rhynchospora_breviuscula_mRNA2674 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| rhynchospora_breviuscula_mRNA2781 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |