PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
rhynchospora_breviuscula_mRNA1061 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_breviuscula_mRNA1062 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_breviuscula_mRNA10940 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_breviuscula_mRNA12008 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA12091 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA12750 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_breviuscula_mRNA12753 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA12889 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA13066 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA13856 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_breviuscula_mRNA15300 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA16505 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA1748 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_breviuscula_mRNA17853 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA17896 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA17902 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA17906 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA18053 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA18946 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA19882 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA1996 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_breviuscula_mRNA2855 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_breviuscula_mRNA4074 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
rhynchospora_breviuscula_mRNA4532 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA4692 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_breviuscula_mRNA4694 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_breviuscula_mRNA4695 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
rhynchospora_breviuscula_mRNA4969 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA7395 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
rhynchospora_breviuscula_mRNA7587 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
rhynchospora_breviuscula_mRNA9588 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH