Rhynchospora breviuscula (rhynchospora_breviuscula)
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Imported from atlas release summary for Rhynchospora breviuscula.
1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1461
Candidate Genes
C3'H/CYP98A
6.16%
C4H
6.07%
BAHD
5.08%
4CL
4.96%
POD
4.69%
T3O
4.07%
UGT
3.98%
UFGT
3.8%
Other Families
61.18%
More Families (94)
7DLGT
126
3.77%
IFS
113
3.38%
CYP76
102
3.05%
DWF4/CYP90B1
85
2.54%
F3H
78
2.33%
F3'H/CYP75B
69
2.06%
CSE
68
2.03%
BR6OX2/CYP85A2
68
2.03%
NMT
64
1.91%
PYKS
61
1.82%
CYP71
61
1.82%
STR
53
1.58%
CAD
47
1.41%
COMT
44
1.32%
SMT1/SMT2/SMT3
42
1.26%
TRI/TRII
41
1.23%
16OMT
40
1.2%
CHS
40
1.2%
H6H
38
1.14%
IFR
36
1.08%
CODM/T6ODM
35
1.05%
GS
35
1.05%
ANR
32
0.96%
LAC
31
0.93%
SGD
30
0.9%
HCT
29
0.87%
RAS
29
0.87%
PMT
28
0.84%
CAS
26
0.78%
CYP90D1
24
0.72%
TPS
23
0.69%
SLS
22
0.66%
T16H
22
0.66%
IO
21
0.63%
GES
21
0.63%
COR
20
0.6%
FNS
18
0.54%
CCR
17
0.51%
NCS
16
0.48%
TAT
16
0.48%
F3'5'H/CYP75A
15
0.45%
PAL
15
0.45%
CYP51G1
15
0.45%
AACT
13
0.39%
8HGO
11
0.33%
F5H/CYP84A
11
0.33%
7DLH
10
0.3%
G8O/G8H
9
0.27%
FPPS
9
0.27%
CNMT
8
0.24%
BBE
8
0.24%
CPD/CYP90A1
8
0.24%
LAMT
7
0.21%
BR6OX1/CYP85A1
7
0.21%
CCoAOMT
6
0.18%
CPR
6
0.18%
HPPR
6
0.18%
ROT3/CYP90C1
6
0.18%
DXS
6
0.18%
GGPPS
6
0.18%
MVD
6
0.18%
CYP719
5
0.15%
MPO
5
0.15%
CHI
5
0.15%
DFR
5
0.15%
MVK
5
0.15%
TYDC_DDC
4
0.12%
ANS/LDOX
4
0.12%
SQS/FDFT1
4
0.12%
SQE
4
0.12%
DET2
4
0.12%
HMGR
4
0.12%
MCT/IspD
4
0.12%
CYP80B1
3
0.09%
ISY
3
0.09%
TDC
3
0.09%
PMK
3
0.09%
6OMT_4OMT_SOMT
2
0.06%
FLS
2
0.06%
FK
2
0.06%
CMK/IspE
2
0.06%
HDR/IspH
2
0.06%
XMT_MXMT_DXMT
1
0.03%
ADC
1
0.03%
SMO1/SMO2
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
DWF1
1
0.03%
MDS/IspF
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
IDI
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 371 | 12 | POD (154) | View species results |
| Terpenoid pathway | 357 | 20 | BAHD (128) | View species results |
| Alkaloid pathway | 331 | 20 | 7DLGT (62) | View species results |
| Flavonoid pathway | 221 | 8 | UFGT (121) | View species results |
| Rosmarinic acid pathway | 123 | 7 | C4H (53) | View species results |
| Steroid pathway | 58 | 10 | SMT1/SMT2/SMT3 (28) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1221 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 228 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rhynchospora_breviuscula_mRNA10808 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| rhynchospora_breviuscula_mRNA11031 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| rhynchospora_breviuscula_mRNA11042 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| rhynchospora_breviuscula_mRNA11043 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| rhynchospora_breviuscula_mRNA11195 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| rhynchospora_breviuscula_mRNA11331 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| rhynchospora_breviuscula_mRNA11361 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| rhynchospora_breviuscula_mRNA11520 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| rhynchospora_breviuscula_mRNA1166 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| rhynchospora_breviuscula_mRNA1182 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| rhynchospora_breviuscula_mRNA12602 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| rhynchospora_breviuscula_mRNA13109 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| rhynchospora_breviuscula_mRNA13138 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| rhynchospora_breviuscula_mRNA13357 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| rhynchospora_breviuscula_mRNA13707 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| rhynchospora_breviuscula_mRNA14138 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| rhynchospora_breviuscula_mRNA14151 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| rhynchospora_breviuscula_mRNA14553 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| rhynchospora_breviuscula_mRNA14614 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| rhynchospora_breviuscula_mRNA16085 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| rhynchospora_breviuscula_mRNA16613 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| rhynchospora_breviuscula_mRNA16863 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| rhynchospora_breviuscula_mRNA16906 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| rhynchospora_breviuscula_mRNA1754 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| rhynchospora_breviuscula_mRNA17623 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| rhynchospora_breviuscula_mRNA18118 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| rhynchospora_breviuscula_mRNA18119 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| rhynchospora_breviuscula_mRNA18807 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| rhynchospora_breviuscula_mRNA2533 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| rhynchospora_breviuscula_mRNA2580 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| rhynchospora_breviuscula_mRNA2704 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| rhynchospora_breviuscula_mRNA3191 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| rhynchospora_breviuscula_mRNA3281 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| rhynchospora_breviuscula_mRNA3940 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| rhynchospora_breviuscula_mRNA3950 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| rhynchospora_breviuscula_mRNA4487 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| rhynchospora_breviuscula_mRNA4539 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| rhynchospora_breviuscula_mRNA4820 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| rhynchospora_breviuscula_mRNA5101 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| rhynchospora_breviuscula_mRNA6206 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| rhynchospora_breviuscula_mRNA6300 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| rhynchospora_breviuscula_mRNA6680 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| rhynchospora_breviuscula_mRNA6691 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| rhynchospora_breviuscula_mRNA6717 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| rhynchospora_breviuscula_mRNA6783 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| rhynchospora_breviuscula_mRNA7059 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| rhynchospora_breviuscula_mRNA7365 | Alkaloid | NMT | low | borderline | NMT__00030__sp_Q43088_RBCMT_PEA |
| rhynchospora_breviuscula_mRNA7711 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| rhynchospora_breviuscula_mRNA7902 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| rhynchospora_breviuscula_mRNA832 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |