PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA11299 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA11970 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA11987 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA12183 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA13731 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA15173 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA15270 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA15594 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA15596 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA15601 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA15602 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA15606 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA16209 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA17249 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA18269 Flavonoid IFR high pass
rhynchospora_breviuscula_mRNA18455 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA18633 Flavonoid IFR medium borderline
rhynchospora_breviuscula_mRNA19769 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA19784 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA19957 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA1997 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA20019 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA20030 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA20139 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA20692 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA20937 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA20938 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA22109 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA24289 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA5706 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA6309 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA6710 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA7450 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA7884 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA9386 Flavonoid IFR low borderline
rhynchospora_breviuscula_mRNA9703 Flavonoid IFR medium pass