PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

/

Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
Reset
Gene Pathway Family Confidence Status Best Target
rhynchospora_breviuscula_mRNA13175 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA13177 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA14885 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_breviuscula_mRNA15276 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA15279 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA15697 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA16157 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA1689 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA18095 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA18714 Steroid CAS low borderline CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA19917 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_breviuscula_mRNA3844 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA5017 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA512 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA5609 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA5610 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA5611 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA5612 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
rhynchospora_breviuscula_mRNA6544 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
rhynchospora_breviuscula_mRNA7304 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
rhynchospora_breviuscula_mRNA7958 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA7959 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA7960 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
rhynchospora_breviuscula_mRNA7993 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_breviuscula_mRNA7994 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
rhynchospora_breviuscula_mRNA8977 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA