PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

/

Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
Reset
Gene Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA12297 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA12454 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA13037 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA13318 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA13326 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA1349 Steroid CYP90D1 medium borderline
rhynchospora_breviuscula_mRNA13937 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA14394 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA14399 Steroid CYP90D1 medium borderline
rhynchospora_breviuscula_mRNA14577 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA15409 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA16500 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA16706 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA16883 Steroid CYP90D1 medium borderline
rhynchospora_breviuscula_mRNA1767 Steroid CYP90D1 medium borderline
rhynchospora_breviuscula_mRNA1769 Steroid CYP90D1 medium borderline
rhynchospora_breviuscula_mRNA18798 Steroid CYP90D1 medium borderline
rhynchospora_breviuscula_mRNA19972 Steroid CYP90D1 medium borderline
rhynchospora_breviuscula_mRNA2103 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA21776 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA5153 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA7643 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA7926 Steroid CYP90D1 low borderline
rhynchospora_breviuscula_mRNA908 Steroid CYP90D1 low borderline