PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status Best Target
rhynchospora_breviuscula_mRNA10423 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
rhynchospora_breviuscula_mRNA10980 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA1191 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA12297 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA13065 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA13880 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA13882 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA13883 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
rhynchospora_breviuscula_mRNA13884 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
rhynchospora_breviuscula_mRNA13885 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA13886 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
rhynchospora_breviuscula_mRNA13891 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA15409 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
rhynchospora_breviuscula_mRNA16706 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
rhynchospora_breviuscula_mRNA2034 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA2035 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA3107 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA6229 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA6230 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA6231 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO
rhynchospora_breviuscula_mRNA6232 Alkaloid SLS medium borderline SLS__00001__sp_Q05047_SLS1_CATRO
rhynchospora_breviuscula_mRNA8661 Alkaloid SLS medium borderline SLS__00002__sp_U5NDT8_SLS2_CATRO