PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA11599 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA11860 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA12352 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA1238 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA13271 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA13272 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA14045 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA14496 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA1543 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA1649 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA1799 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA1803 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA18243 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA19794 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA20004 Alkaloid GS medium pass
rhynchospora_breviuscula_mRNA20046 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA20175 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA20220 Alkaloid GS medium pass
rhynchospora_breviuscula_mRNA20277 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA20386 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA20394 Alkaloid GS medium pass
rhynchospora_breviuscula_mRNA20661 Alkaloid GS medium pass
rhynchospora_breviuscula_mRNA20947 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA20974 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA21784 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA22261 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA23286 Alkaloid GS medium pass
rhynchospora_breviuscula_mRNA4287 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA4428 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA5463 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA5464 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA6572 Alkaloid GS high pass
rhynchospora_breviuscula_mRNA8654 Alkaloid GS low borderline
rhynchospora_breviuscula_mRNA8961 Alkaloid GS medium pass
rhynchospora_breviuscula_mRNA9883 Alkaloid GS medium pass