PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA10048 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA11962 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA1256 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA13496 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA13500 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA15073 Alkaloid PMT medium borderline
rhynchospora_breviuscula_mRNA15376 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA15377 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA15378 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA1541 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA15761 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA159 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA160 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA162 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA164 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA16780 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA16953 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA19556 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA19557 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA19559 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA206 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA2570 Alkaloid PMT medium pass
rhynchospora_breviuscula_mRNA278 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA3823 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA5841 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA6304 Alkaloid PMT medium borderline
rhynchospora_breviuscula_mRNA8640 Alkaloid PMT low borderline
rhynchospora_breviuscula_mRNA8736 Alkaloid PMT medium pass