Rhynchospora breviuscula (rhynchospora_breviuscula)
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Imported from atlas release summary for Rhynchospora breviuscula.
1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1461
Candidate Genes
C3'H/CYP98A
6.16%
C4H
6.07%
BAHD
5.08%
4CL
4.96%
POD
4.69%
T3O
4.07%
UGT
3.98%
UFGT
3.8%
Other Families
61.18%
More Families (94)
7DLGT
126
3.77%
IFS
113
3.38%
CYP76
102
3.05%
DWF4/CYP90B1
85
2.54%
F3H
78
2.33%
F3'H/CYP75B
69
2.06%
CSE
68
2.03%
BR6OX2/CYP85A2
68
2.03%
NMT
64
1.91%
PYKS
61
1.82%
CYP71
61
1.82%
STR
53
1.58%
CAD
47
1.41%
COMT
44
1.32%
SMT1/SMT2/SMT3
42
1.26%
TRI/TRII
41
1.23%
16OMT
40
1.2%
CHS
40
1.2%
H6H
38
1.14%
IFR
36
1.08%
CODM/T6ODM
35
1.05%
GS
35
1.05%
ANR
32
0.96%
LAC
31
0.93%
SGD
30
0.9%
HCT
29
0.87%
RAS
29
0.87%
PMT
28
0.84%
CAS
26
0.78%
CYP90D1
24
0.72%
TPS
23
0.69%
SLS
22
0.66%
T16H
22
0.66%
IO
21
0.63%
GES
21
0.63%
COR
20
0.6%
FNS
18
0.54%
CCR
17
0.51%
NCS
16
0.48%
TAT
16
0.48%
F3'5'H/CYP75A
15
0.45%
PAL
15
0.45%
CYP51G1
15
0.45%
AACT
13
0.39%
8HGO
11
0.33%
F5H/CYP84A
11
0.33%
7DLH
10
0.3%
G8O/G8H
9
0.27%
FPPS
9
0.27%
CNMT
8
0.24%
BBE
8
0.24%
CPD/CYP90A1
8
0.24%
LAMT
7
0.21%
BR6OX1/CYP85A1
7
0.21%
CCoAOMT
6
0.18%
CPR
6
0.18%
HPPR
6
0.18%
ROT3/CYP90C1
6
0.18%
DXS
6
0.18%
GGPPS
6
0.18%
MVD
6
0.18%
CYP719
5
0.15%
MPO
5
0.15%
CHI
5
0.15%
DFR
5
0.15%
MVK
5
0.15%
TYDC_DDC
4
0.12%
ANS/LDOX
4
0.12%
SQS/FDFT1
4
0.12%
SQE
4
0.12%
DET2
4
0.12%
HMGR
4
0.12%
MCT/IspD
4
0.12%
CYP80B1
3
0.09%
ISY
3
0.09%
TDC
3
0.09%
PMK
3
0.09%
6OMT_4OMT_SOMT
2
0.06%
FLS
2
0.06%
FK
2
0.06%
CMK/IspE
2
0.06%
HDR/IspH
2
0.06%
XMT_MXMT_DXMT
1
0.03%
ADC
1
0.03%
SMO1/SMO2
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
DWF1
1
0.03%
MDS/IspF
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
IDI
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 371 | 12 | POD (154) | View species results |
| Terpenoid pathway | 357 | 20 | BAHD (128) | View species results |
| Alkaloid pathway | 331 | 20 | 7DLGT (62) | View species results |
| Flavonoid pathway | 221 | 8 | UFGT (121) | View species results |
| Rosmarinic acid pathway | 123 | 7 | C4H (53) | View species results |
| Steroid pathway | 58 | 10 | SMT1/SMT2/SMT3 (28) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1221 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 228 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rhynchospora_breviuscula_mRNA10014 | Phenylpropanoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| rhynchospora_breviuscula_mRNA10163 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rhynchospora_breviuscula_mRNA10330 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| rhynchospora_breviuscula_mRNA10357 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA10596 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| rhynchospora_breviuscula_mRNA11059 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| rhynchospora_breviuscula_mRNA11136 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rhynchospora_breviuscula_mRNA11212 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA11213 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA11250 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA11251 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA11673 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rhynchospora_breviuscula_mRNA12438 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA13189 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rhynchospora_breviuscula_mRNA13191 | Phenylpropanoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| rhynchospora_breviuscula_mRNA14582 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA15038 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| rhynchospora_breviuscula_mRNA15039 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| rhynchospora_breviuscula_mRNA16530 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| rhynchospora_breviuscula_mRNA16593 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rhynchospora_breviuscula_mRNA16735 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| rhynchospora_breviuscula_mRNA16792 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA17162 | Phenylpropanoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rhynchospora_breviuscula_mRNA17510 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rhynchospora_breviuscula_mRNA17557 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| rhynchospora_breviuscula_mRNA17577 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rhynchospora_breviuscula_mRNA19534 | Phenylpropanoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| rhynchospora_breviuscula_mRNA19535 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| rhynchospora_breviuscula_mRNA20210 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rhynchospora_breviuscula_mRNA20229 | Phenylpropanoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| rhynchospora_breviuscula_mRNA20285 | Phenylpropanoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rhynchospora_breviuscula_mRNA20405 | Phenylpropanoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rhynchospora_breviuscula_mRNA20444 | Phenylpropanoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| rhynchospora_breviuscula_mRNA20476 | Phenylpropanoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| rhynchospora_breviuscula_mRNA20494 | Phenylpropanoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| rhynchospora_breviuscula_mRNA20531 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rhynchospora_breviuscula_mRNA20776 | Phenylpropanoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| rhynchospora_breviuscula_mRNA20778 | Phenylpropanoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rhynchospora_breviuscula_mRNA21432 | Phenylpropanoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| rhynchospora_breviuscula_mRNA22892 | Phenylpropanoid | 4CL | low | borderline | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| rhynchospora_breviuscula_mRNA23109 | Phenylpropanoid | 4CL | medium | pass | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rhynchospora_breviuscula_mRNA24299 | Phenylpropanoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| rhynchospora_breviuscula_mRNA3309 | Phenylpropanoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| rhynchospora_breviuscula_mRNA3906 | Phenylpropanoid | 4CL | medium | pass | 4CL__00009__sp_Q67W82_4CL4_ORYSJ |
| rhynchospora_breviuscula_mRNA41 | Phenylpropanoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| rhynchospora_breviuscula_mRNA4240 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| rhynchospora_breviuscula_mRNA4423 | Phenylpropanoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| rhynchospora_breviuscula_mRNA5391 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| rhynchospora_breviuscula_mRNA5535 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rhynchospora_breviuscula_mRNA6329 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |