PlantSME Plant secondary metabolism enzyme database

Rhynchospora breviuscula (rhynchospora_breviuscula)

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Imported from atlas release summary for Rhynchospora breviuscula.

1461
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 371 12 POD (154) View species results
Terpenoid pathway 357 20 BAHD (128) View species results
Alkaloid pathway 331 20 7DLGT (62) View species results
Flavonoid pathway 221 8 UFGT (121) View species results
Rosmarinic acid pathway 123 7 C4H (53) View species results
Steroid pathway 58 10 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 228 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
rhynchospora_breviuscula_mRNA101 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA10262 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA10535 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA10536 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA10537 Alkaloid PYKS medium pass
rhynchospora_breviuscula_mRNA10717 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA10784 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA1113 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA11556 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA11577 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA11850 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA11851 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA11852 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA11853 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA11854 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA12256 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA13077 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA13387 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA13843 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA14101 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA14193 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA14196 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA15405 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA1620 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA16893 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA16995 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA17157 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA17158 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA17159 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA17161 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA17511 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA17512 Alkaloid PYKS medium pass
rhynchospora_breviuscula_mRNA18259 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA18460 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA18666 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA18815 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA18913 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA18915 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA18935 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA18936 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA19315 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA19675 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA19698 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA22633 Alkaloid PYKS medium pass
rhynchospora_breviuscula_mRNA5627 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA649 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA650 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA6504 Alkaloid PYKS high pass
rhynchospora_breviuscula_mRNA7346 Alkaloid PYKS low borderline
rhynchospora_breviuscula_mRNA747 Alkaloid PYKS high pass