PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.38% Phenylpropanoid pathway 22.72% Alkaloid pathway 20.96% Flavonoid pathway 15.85% Rosmarinic acid pathway 9.93% Steroid pathway 4.16%
Family Distribution
C3'H/CYP98A 7.37% C4H 7.0% BAHD 4.87% POD 4.63% UGT 4.56% T3O 4.44% 7DLGT 4.44% UFGT 4.4%
Other Families 58.29%
More Families (97)
CYP76 335 3.91% IFS 327 3.82% F3'H/CYP75B 277 3.24% 4CL 234 2.73% BR6OX2/CYP85A2 230 2.69% DWF4/CYP90B1 218 2.55% F3H 213 2.49% CYP71 163 1.9% CODM/T6ODM 119 1.39% NMT 110 1.29% STR 109 1.27% CAD 105 1.23% SMT1/SMT2/SMT3 103 1.2% PYKS 100 1.17% CSE 90 1.05% CYP90D1 88 1.03% H6H 87 1.02% SLS 86 1.0% PAL 84 0.98% PMT 74 0.86% TRI/TRII 73 0.85% COMT 72 0.84% TPS 71 0.83% CAS 69 0.81% GES 68 0.79% SGD 68 0.79% RAS 68 0.79% CCR 66 0.77% T16H 65 0.76% CYP51G1 64 0.75% G8O/G8H 58 0.68% ANR 57 0.67% HCT 56 0.65% LAC 53 0.62% 16OMT 50 0.58% NCS 44 0.51% CHS 43 0.5% IO 42 0.49% GS 41 0.48% FNS 41 0.48% BBE 40 0.47% DFR 39 0.46% F5H/CYP84A 39 0.46% F3'5'H/CYP75A 38 0.44% IFR 34 0.4% CPD/CYP90A1 33 0.39% BR6OX1/CYP85A1 32 0.37% COR 25 0.29% CNMT 24 0.28% 8HGO 21 0.25% CYP719 21 0.25% 7DLH 19 0.22% ANS/LDOX 19 0.22% LAMT 18 0.21% TYDC_DDC 17 0.2% TAT 15 0.18% 6OMT_4OMT_SOMT 13 0.15% SMO1/SMO2 11 0.13% MVK 11 0.13% CYP80B1 10 0.12% CYP80F1 10 0.12% HPPR 10 0.12% CPR 9 0.11% ROT3/CYP90C1 9 0.11% GGPPS 9 0.11% AACT 9 0.11% FPPS 9 0.11% ADC 8 0.09% XMT_MXMT_DXMT 8 0.09% CCoAOMT 8 0.09% SQS/FDFT1 8 0.09% TDC 7 0.08% ODC 6 0.07% PMK 6 0.07% MPO 5 0.06% ISY 5 0.06% DET2 5 0.06% HMGS 5 0.06% FLS 4 0.05% HYD1 4 0.05% IDI 4 0.05% MVD 4 0.05% CHI 3 0.04% DWF1 3 0.04% DWF7 3 0.04% SQE 3 0.04% CPI1 3 0.04% DWF5 3 0.04% DXS 3 0.04% HDR/IspH 3 0.04% HMGR 3 0.04% FK 2 0.02% MCT/IspD 2 0.02% DXR 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80F1
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Gene Pathway Family Confidence Status Best Target
Scer01G0003380.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
Scer03G0004030.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
Scer03G0004060.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
Scer03G0042170.1 Alkaloid CYP80F1 medium borderline CYP80F1__00002__tr_Q1A1B0_Q1A1B0_HYONI
Scer03G0055460.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
Scer03G0055470.1 Alkaloid CYP80F1 medium borderline CYP80F1__00002__tr_Q1A1B0_Q1A1B0_HYONI
Scer04G0038860.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
Scer05G0003230.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
Scer05G0003250.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE
Scer05G0003340.1 Alkaloid CYP80F1 medium borderline CYP80F1__00001__tr_A0A024CI64_A0A024CI64_ATRBE