PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Scer01G0009720.1 Alkaloid IO medium borderline
Scer01G0036270.1 Alkaloid IO medium borderline
Scer01G0043540.1 Alkaloid IO medium borderline
Scer02G0011240.1 Alkaloid IO medium pass
Scer02G0015400.1 Alkaloid IO medium pass
Scer02G0031270.1 Alkaloid IO medium borderline
Scer02G0032130.1 Alkaloid IO medium borderline
Scer02G0032150.1 Alkaloid IO medium borderline
Scer02G0049760.1 Alkaloid IO medium borderline
Scer03G0019370.1 Alkaloid IO medium borderline
Scer03G0019380.1 Alkaloid IO medium borderline
Scer03G0019590.1 Alkaloid IO low borderline
Scer03G0029720.1 Alkaloid IO medium borderline
Scer03G0038720.1 Alkaloid IO medium pass
Scer04G0041670.1 Alkaloid IO medium borderline
Scer04G0046990.1 Alkaloid IO medium borderline
Scer04G0047030.1 Alkaloid IO medium borderline
Scer04G0047040.1 Alkaloid IO medium borderline
Scer04G0047070.1 Alkaloid IO medium borderline
Scer04G0061360.1 Alkaloid IO medium borderline
Scer04G0061400.1 Alkaloid IO medium borderline
Scer05G0007140.1 Alkaloid IO medium borderline
Scer05G0026310.1 Alkaloid IO medium borderline
Scer05G0028860.1 Alkaloid IO medium borderline
Scer05G0039400.1 Alkaloid IO low borderline
Scer05G0062030.1 Alkaloid IO medium borderline
Scer05G0062050.1 Alkaloid IO medium borderline
Scer06G0005000.1 Alkaloid IO medium borderline
Scer06G0032870.1 Alkaloid IO medium borderline
Scer06G0053140.1 Alkaloid IO medium borderline
Scer07G0003550.1 Alkaloid IO medium pass
Scer07G0004230.1 Alkaloid IO medium pass
Scer07G0007580.1 Alkaloid IO medium borderline
Scer07G0024900.1 Alkaloid IO medium borderline
Scer07G0040680.1 Alkaloid IO medium borderline
Scer07G0050360.1 Alkaloid IO medium pass
Scer07G0050370.1 Alkaloid IO medium pass
Scer07G0050400.1 Alkaloid IO medium pass
Scer07G0050410.1 Alkaloid IO medium pass
Scer07G0050440.1 Alkaloid IO medium pass
Scer07G0050460.1 Alkaloid IO medium pass
ScerGWHASIY000000080001730.1 Alkaloid IO medium borderline