PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Scer01G0000020.1 Alkaloid T3O medium borderline
Scer01G0000890.1 Alkaloid T3O medium borderline
Scer01G0000910.1 Alkaloid T3O medium borderline
Scer01G0000930.1 Alkaloid T3O medium borderline
Scer01G0000990.1 Alkaloid T3O medium borderline
Scer01G0001270.1 Alkaloid T3O medium borderline
Scer01G0001600.1 Alkaloid T3O medium borderline
Scer01G0007750.1 Alkaloid T3O medium borderline
Scer01G0010980.1 Alkaloid T3O medium borderline
Scer01G0013870.1 Alkaloid T3O medium borderline
Scer01G0015360.1 Alkaloid T3O medium pass
Scer01G0015600.1 Alkaloid T3O medium pass
Scer01G0017050.1 Alkaloid T3O medium borderline
Scer01G0017490.1 Alkaloid T3O medium borderline
Scer01G0019010.1 Alkaloid T3O low borderline
Scer01G0021410.1 Alkaloid T3O medium borderline
Scer01G0021770.1 Alkaloid T3O medium borderline
Scer01G0022080.1 Alkaloid T3O medium borderline
Scer01G0022130.1 Alkaloid T3O medium borderline
Scer01G0023170.1 Alkaloid T3O medium pass
Scer01G0024470.1 Alkaloid T3O medium pass
Scer01G0024520.1 Alkaloid T3O medium pass
Scer01G0027420.1 Alkaloid T3O medium pass
Scer01G0027470.1 Alkaloid T3O medium pass
Scer01G0027570.1 Alkaloid T3O medium pass
Scer01G0032680.1 Alkaloid T3O medium borderline
Scer01G0032850.1 Alkaloid T3O medium borderline
Scer01G0034770.1 Alkaloid T3O medium borderline
Scer01G0035060.1 Alkaloid T3O medium borderline
Scer01G0040480.1 Alkaloid T3O medium borderline
Scer01G0043490.1 Alkaloid T3O medium borderline
Scer01G0043500.1 Alkaloid T3O medium borderline
Scer01G0043550.1 Alkaloid T3O medium borderline
Scer01G0045440.1 Alkaloid T3O medium borderline
Scer01G0046800.1 Alkaloid T3O low borderline
Scer01G0047280.1 Alkaloid T3O medium borderline
Scer01G0047330.1 Alkaloid T3O low borderline
Scer01G0048880.1 Alkaloid T3O medium borderline
Scer01G0048890.1 Alkaloid T3O medium borderline
Scer01G0048900.1 Alkaloid T3O medium borderline
Scer01G0048910.1 Alkaloid T3O medium borderline
Scer01G0049000.1 Alkaloid T3O medium borderline
Scer01G0049390.1 Alkaloid T3O low borderline
Scer01G0049400.1 Alkaloid T3O low borderline
Scer01G0056490.1 Alkaloid T3O medium borderline
Scer02G0000150.1 Alkaloid T3O medium borderline
Scer02G0001940.1 Alkaloid T3O medium borderline
Scer02G0002730.1 Alkaloid T3O medium borderline
Scer02G0002820.1 Alkaloid T3O medium borderline
Scer02G0003670.1 Alkaloid T3O medium borderline