PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
Scer01G0042830.1 Alkaloid TYDC_DDC medium borderline
Scer02G0000850.1 Alkaloid TYDC_DDC medium borderline
Scer02G0028970.1 Alkaloid TYDC_DDC medium borderline
Scer02G0065760.1 Alkaloid TYDC_DDC medium borderline
Scer03G0038130.1 Alkaloid TYDC_DDC medium borderline
Scer03G0046400.1 Alkaloid TYDC_DDC medium borderline
Scer03G0047720.1 Alkaloid TYDC_DDC medium borderline
Scer04G0049220.1 Alkaloid TYDC_DDC medium borderline
Scer04G0049300.1 Alkaloid TYDC_DDC low borderline
Scer04G0059350.1 Alkaloid TYDC_DDC medium borderline
Scer04G0060160.1 Alkaloid TYDC_DDC medium borderline
Scer04G0060170.1 Alkaloid TYDC_DDC medium borderline
Scer05G0063560.1 Alkaloid TYDC_DDC medium borderline
Scer05G0064640.1 Alkaloid TYDC_DDC medium borderline
Scer06G0055200.1 Alkaloid TYDC_DDC medium borderline
Scer06G0055230.1 Alkaloid TYDC_DDC medium borderline
Scer06G0055260.1 Alkaloid TYDC_DDC medium borderline