PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Scer02G0064230.1 Flavonoid F3H medium borderline
Scer02G0064270.1 Flavonoid F3H medium borderline
Scer03G0000320.1 Flavonoid F3H medium borderline
Scer03G0013400.1 Flavonoid F3H low borderline
Scer03G0016860.1 Flavonoid F3H medium borderline
Scer03G0019100.1 Flavonoid F3H medium borderline
Scer03G0035210.1 Flavonoid F3H low borderline
Scer03G0036970.1 Flavonoid F3H medium borderline
Scer03G0039110.1 Flavonoid F3H medium borderline
Scer03G0042360.1 Flavonoid F3H medium borderline
Scer03G0047060.1 Flavonoid F3H medium pass
Scer03G0047660.1 Flavonoid F3H medium borderline
Scer03G0047840.1 Flavonoid F3H medium borderline
Scer03G0047850.1 Flavonoid F3H medium borderline
Scer03G0048060.1 Flavonoid F3H medium borderline
Scer03G0048100.1 Flavonoid F3H medium borderline
Scer03G0048120.1 Flavonoid F3H medium borderline
Scer03G0049280.1 Flavonoid F3H medium borderline
Scer03G0052420.1 Flavonoid F3H medium borderline
Scer03G0055090.1 Flavonoid F3H medium borderline
Scer03G0055350.1 Flavonoid F3H low borderline
Scer04G0000400.1 Flavonoid F3H medium borderline
Scer04G0002740.1 Flavonoid F3H medium pass
Scer04G0010550.1 Flavonoid F3H medium borderline
Scer04G0012740.1 Flavonoid F3H medium borderline
Scer04G0023290.1 Flavonoid F3H medium borderline
Scer04G0026410.1 Flavonoid F3H low borderline
Scer04G0028440.1 Flavonoid F3H medium borderline
Scer04G0032340.1 Flavonoid F3H medium borderline
Scer04G0035800.1 Flavonoid F3H medium borderline
Scer04G0035810.1 Flavonoid F3H medium borderline
Scer04G0035830.1 Flavonoid F3H medium borderline
Scer04G0035840.1 Flavonoid F3H medium borderline
Scer04G0035860.1 Flavonoid F3H medium borderline
Scer04G0035920.1 Flavonoid F3H medium pass
Scer04G0035980.1 Flavonoid F3H medium borderline
Scer04G0035990.1 Flavonoid F3H medium borderline
Scer04G0036010.1 Flavonoid F3H medium borderline
Scer04G0036020.1 Flavonoid F3H medium borderline
Scer04G0036050.1 Flavonoid F3H medium borderline
Scer04G0036060.1 Flavonoid F3H medium borderline
Scer04G0037830.1 Flavonoid F3H medium borderline
Scer04G0039370.1 Flavonoid F3H medium borderline
Scer04G0039770.1 Flavonoid F3H medium pass
Scer04G0039880.1 Flavonoid F3H medium borderline
Scer04G0040260.1 Flavonoid F3H medium borderline
Scer04G0040350.1 Flavonoid F3H medium borderline
Scer04G0041120.1 Flavonoid F3H medium borderline
Scer04G0041810.1 Flavonoid F3H medium borderline
Scer04G0043850.1 Flavonoid F3H medium pass