PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Scer01G0000560.1 Alkaloid PMT medium pass
Scer01G0000580.1 Alkaloid PMT medium pass
Scer01G0000600.1 Alkaloid PMT medium pass
Scer01G0002490.1 Alkaloid PMT medium pass
Scer01G0005510.1 Alkaloid PMT medium pass
Scer01G0010070.1 Alkaloid PMT medium pass
Scer01G0015350.1 Alkaloid PMT medium pass
Scer01G0021540.1 Alkaloid PMT medium pass
Scer01G0021550.1 Alkaloid PMT medium pass
Scer02G0005520.1 Alkaloid PMT medium pass
Scer02G0023380.1 Alkaloid PMT medium borderline
Scer02G0038440.1 Alkaloid PMT medium pass
Scer02G0039630.1 Alkaloid PMT medium pass
Scer02G0050240.1 Alkaloid PMT medium pass
Scer02G0055000.1 Alkaloid PMT medium pass
Scer02G0055100.1 Alkaloid PMT medium pass
Scer02G0055150.1 Alkaloid PMT low borderline
Scer03G0001850.1 Alkaloid PMT medium pass
Scer03G0003990.1 Alkaloid PMT medium pass
Scer03G0011140.1 Alkaloid PMT low borderline
Scer03G0014460.1 Alkaloid PMT medium pass
Scer03G0016490.1 Alkaloid PMT medium pass
Scer03G0016500.1 Alkaloid PMT medium pass
Scer03G0016510.1 Alkaloid PMT medium pass
Scer03G0030090.1 Alkaloid PMT medium pass
Scer03G0033160.1 Alkaloid PMT medium pass
Scer03G0038990.1 Alkaloid PMT low borderline
Scer03G0041820.1 Alkaloid PMT medium pass
Scer04G0000520.1 Alkaloid PMT medium pass
Scer04G0004700.1 Alkaloid PMT medium pass
Scer04G0011340.1 Alkaloid PMT medium pass
Scer04G0027130.1 Alkaloid PMT medium pass
Scer04G0035120.1 Alkaloid PMT low borderline
Scer04G0035130.1 Alkaloid PMT low borderline
Scer04G0035140.1 Alkaloid PMT low borderline
Scer04G0035160.1 Alkaloid PMT medium pass
Scer04G0035330.1 Alkaloid PMT medium pass
Scer04G0036280.1 Alkaloid PMT medium pass
Scer04G0036300.1 Alkaloid PMT medium pass
Scer04G0040190.1 Alkaloid PMT medium pass
Scer04G0045750.1 Alkaloid PMT low borderline
Scer04G0049880.1 Alkaloid PMT medium pass
Scer04G0049890.1 Alkaloid PMT medium pass
Scer04G0049900.1 Alkaloid PMT medium pass
Scer04G0050750.1 Alkaloid PMT low borderline
Scer04G0056080.1 Alkaloid PMT medium pass
Scer05G0017420.1 Alkaloid PMT medium borderline
Scer05G0022870.1 Alkaloid PMT medium pass
Scer05G0033730.1 Alkaloid PMT medium pass
Scer05G0037970.1 Alkaloid PMT medium pass