Secale cereale (secale_cereale)
Imported from atlas release summary for Secale cereale.
3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3363
Candidate Genes
C3'H/CYP98A
7.37%
C4H
7.0%
BAHD
4.87%
POD
4.63%
UGT
4.56%
T3O
4.44%
7DLGT
4.44%
UFGT
4.4%
Other Families
58.29%
More Families (97)
CYP76
335
3.91%
IFS
327
3.82%
F3'H/CYP75B
277
3.24%
4CL
234
2.73%
BR6OX2/CYP85A2
230
2.69%
DWF4/CYP90B1
218
2.55%
F3H
213
2.49%
CYP71
163
1.9%
CODM/T6ODM
119
1.39%
NMT
110
1.29%
STR
109
1.27%
CAD
105
1.23%
SMT1/SMT2/SMT3
103
1.2%
PYKS
100
1.17%
CSE
90
1.05%
CYP90D1
88
1.03%
H6H
87
1.02%
SLS
86
1.0%
PAL
84
0.98%
PMT
74
0.86%
TRI/TRII
73
0.85%
COMT
72
0.84%
TPS
71
0.83%
CAS
69
0.81%
GES
68
0.79%
SGD
68
0.79%
RAS
68
0.79%
CCR
66
0.77%
T16H
65
0.76%
CYP51G1
64
0.75%
G8O/G8H
58
0.68%
ANR
57
0.67%
HCT
56
0.65%
LAC
53
0.62%
16OMT
50
0.58%
NCS
44
0.51%
CHS
43
0.5%
IO
42
0.49%
GS
41
0.48%
FNS
41
0.48%
BBE
40
0.47%
DFR
39
0.46%
F5H/CYP84A
39
0.46%
F3'5'H/CYP75A
38
0.44%
IFR
34
0.4%
CPD/CYP90A1
33
0.39%
BR6OX1/CYP85A1
32
0.37%
COR
25
0.29%
CNMT
24
0.28%
8HGO
21
0.25%
CYP719
21
0.25%
7DLH
19
0.22%
ANS/LDOX
19
0.22%
LAMT
18
0.21%
TYDC_DDC
17
0.2%
TAT
15
0.18%
6OMT_4OMT_SOMT
13
0.15%
SMO1/SMO2
11
0.13%
MVK
11
0.13%
CYP80B1
10
0.12%
CYP80F1
10
0.12%
HPPR
10
0.12%
CPR
9
0.11%
ROT3/CYP90C1
9
0.11%
GGPPS
9
0.11%
AACT
9
0.11%
FPPS
9
0.11%
ADC
8
0.09%
XMT_MXMT_DXMT
8
0.09%
CCoAOMT
8
0.09%
SQS/FDFT1
8
0.09%
TDC
7
0.08%
ODC
6
0.07%
PMK
6
0.07%
MPO
5
0.06%
ISY
5
0.06%
DET2
5
0.06%
HMGS
5
0.06%
FLS
4
0.05%
HYD1
4
0.05%
IDI
4
0.05%
MVD
4
0.05%
CHI
3
0.04%
DWF1
3
0.04%
DWF7
3
0.04%
SQE
3
0.04%
CPI1
3
0.04%
DWF5
3
0.04%
DXS
3
0.04%
HDR/IspH
3
0.04%
HMGR
3
0.04%
FK
2
0.02%
MCT/IspD
2
0.02%
DXR
2
0.02%
CMK/IspE
2
0.02%
HDS/IspG
2
0.02%
MDS/IspF
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 887 | 19 | UGT (380) | View species results |
| Phenylpropanoid pathway | 764 | 12 | POD (385) | View species results |
| Alkaloid pathway | 705 | 20 | 7DLGT (158) | View species results |
| Flavonoid pathway | 533 | 14 | UFGT (361) | View species results |
| Rosmarinic acid pathway | 334 | 7 | C4H (185) | View species results |
| Steroid pathway | 140 | 13 | SMT1/SMT2/SMT3 (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3774 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 541 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Scer06G0001380.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer06G0018880.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer06G0025380.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer06G0025730.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer06G0028960.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer06G0042180.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer06G0057630.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0015580.1 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Scer07G0024490.1 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Scer07G0029460.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0031050.1 | Alkaloid | PMT | medium | borderline | PMT__00001__sp_Q42963_PMT1_TOBAC |
| Scer07G0033680.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0033690.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0035950.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0042310.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0049200.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0049210.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0049380.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0049770.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0053910.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| Scer07G0054680.1 | Alkaloid | PMT | medium | pass | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| ScerGWHASIY000000080005200.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| ScerGWHASIY000000080006010.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |
| ScerGWHASIY000000080011760.1 | Alkaloid | PMT | low | borderline | PMT__00002__sp_Q5JNT2_AT4_ORYSJ |