PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Scer03G0012120.1 Alkaloid T3O medium borderline
Scer03G0013850.1 Alkaloid T3O medium pass
Scer03G0014660.1 Alkaloid T3O medium pass
Scer03G0014670.1 Alkaloid T3O low borderline
Scer03G0014680.1 Alkaloid T3O low borderline
Scer03G0014760.1 Alkaloid T3O medium pass
Scer03G0016000.1 Alkaloid T3O medium borderline
Scer03G0018940.1 Alkaloid T3O low borderline
Scer03G0021590.1 Alkaloid T3O medium borderline
Scer03G0025890.1 Alkaloid T3O medium pass
Scer03G0025900.1 Alkaloid T3O medium pass
Scer03G0028230.1 Alkaloid T3O low borderline
Scer03G0029630.1 Alkaloid T3O medium pass
Scer03G0035190.1 Alkaloid T3O medium borderline
Scer03G0039970.1 Alkaloid T3O medium borderline
Scer03G0039990.1 Alkaloid T3O low borderline
Scer03G0040000.1 Alkaloid T3O medium pass
Scer03G0040010.1 Alkaloid T3O medium pass
Scer03G0040880.1 Alkaloid T3O medium pass
Scer03G0044250.1 Alkaloid T3O medium borderline
Scer03G0044330.1 Alkaloid T3O medium pass
Scer03G0044710.1 Alkaloid T3O medium pass
Scer03G0049460.1 Alkaloid T3O medium borderline
Scer03G0054530.1 Alkaloid T3O medium borderline
Scer04G0000670.1 Alkaloid T3O medium borderline
Scer04G0002140.1 Alkaloid T3O medium pass
Scer04G0003930.1 Alkaloid T3O medium borderline
Scer04G0005830.1 Alkaloid T3O medium pass
Scer04G0005870.1 Alkaloid T3O medium borderline
Scer04G0005880.1 Alkaloid T3O medium borderline
Scer04G0006730.1 Alkaloid T3O medium pass
Scer04G0007210.1 Alkaloid T3O medium pass
Scer04G0021480.1 Alkaloid T3O medium pass
Scer04G0022480.1 Alkaloid T3O low borderline
Scer04G0027280.1 Alkaloid T3O medium borderline
Scer04G0028590.1 Alkaloid T3O medium borderline
Scer04G0030290.1 Alkaloid T3O low borderline
Scer04G0036340.1 Alkaloid T3O medium borderline
Scer04G0036750.1 Alkaloid T3O medium borderline
Scer04G0036760.1 Alkaloid T3O medium borderline
Scer04G0036980.1 Alkaloid T3O medium borderline
Scer04G0037020.1 Alkaloid T3O medium borderline
Scer04G0038100.1 Alkaloid T3O medium borderline
Scer04G0039030.1 Alkaloid T3O low borderline
Scer04G0039760.1 Alkaloid T3O medium borderline
Scer04G0039990.1 Alkaloid T3O medium borderline
Scer04G0040730.1 Alkaloid T3O medium borderline
Scer04G0041000.1 Alkaloid T3O medium borderline
Scer04G0041020.1 Alkaloid T3O medium borderline
Scer04G0041070.1 Alkaloid T3O medium borderline