PlantSME Plant secondary metabolism enzyme database

Secale cereale (secale_cereale)

Imported from atlas release summary for Secale cereale.

3363
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 887 19 UGT (380) View species results
Phenylpropanoid pathway 764 12 POD (385) View species results
Alkaloid pathway 705 20 7DLGT (158) View species results
Flavonoid pathway 533 14 UFGT (361) View species results
Rosmarinic acid pathway 334 7 C4H (185) View species results
Steroid pathway 140 13 SMT1/SMT2/SMT3 (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3774 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Scer05G0040220.1 Rosmarinic Acid 4CL medium pass
Scer05G0045720.1 Rosmarinic Acid 4CL low borderline
Scer05G0051430.1 Rosmarinic Acid 4CL medium pass
Scer05G0053860.1 Rosmarinic Acid 4CL medium pass
Scer05G0053870.1 Rosmarinic Acid 4CL medium pass
Scer05G0054040.1 Rosmarinic Acid 4CL medium pass
Scer05G0054160.1 Rosmarinic Acid 4CL medium pass
Scer05G0054170.1 Rosmarinic Acid 4CL medium pass
Scer05G0054350.1 Rosmarinic Acid 4CL medium pass
Scer05G0057870.1 Rosmarinic Acid 4CL medium pass
Scer06G0000030.1 Rosmarinic Acid 4CL medium pass
Scer06G0007730.1 Rosmarinic Acid 4CL medium pass
Scer06G0007750.1 Rosmarinic Acid 4CL medium pass
Scer06G0021800.1 Rosmarinic Acid 4CL medium pass
Scer06G0025560.1 Rosmarinic Acid 4CL medium pass
Scer06G0033840.1 Rosmarinic Acid 4CL low borderline
Scer06G0038990.1 Rosmarinic Acid 4CL medium pass
Scer07G0003730.1 Rosmarinic Acid 4CL low borderline
Scer07G0003740.1 Rosmarinic Acid 4CL low borderline
Scer07G0013340.1 Rosmarinic Acid 4CL medium pass
Scer07G0022640.1 Rosmarinic Acid 4CL medium pass
Scer07G0022650.1 Rosmarinic Acid 4CL medium pass
Scer07G0028680.1 Rosmarinic Acid 4CL low borderline
ScerGWHASIY000000080003270.1 Rosmarinic Acid 4CL medium pass
ScerGWHASIY000000080004210.1 Rosmarinic Acid 4CL low borderline
ScerGWHASIY000000080006780.1 Rosmarinic Acid 4CL medium pass
ScerGWHASIY000000080016290.1 Rosmarinic Acid 4CL low borderline
ScerGWHASIY000000080017060.1 Rosmarinic Acid 4CL medium pass
Scer01G0000020.1 Rosmarinic Acid C4H low borderline
Scer01G0000720.1 Rosmarinic Acid C4H low borderline
Scer01G0000890.1 Rosmarinic Acid C4H medium pass
Scer01G0000910.1 Rosmarinic Acid C4H medium pass
Scer01G0000930.1 Rosmarinic Acid C4H medium pass
Scer01G0000990.1 Rosmarinic Acid C4H medium pass
Scer01G0001270.1 Rosmarinic Acid C4H low borderline
Scer01G0001600.1 Rosmarinic Acid C4H low borderline
Scer01G0002370.1 Rosmarinic Acid C4H low borderline
Scer01G0004760.1 Rosmarinic Acid C4H medium pass
Scer01G0005180.1 Rosmarinic Acid C4H medium pass
Scer01G0007750.1 Rosmarinic Acid C4H low borderline
Scer01G0009720.1 Rosmarinic Acid C4H low borderline
Scer01G0010980.1 Rosmarinic Acid C4H medium pass
Scer01G0013870.1 Rosmarinic Acid C4H medium pass
Scer01G0014210.1 Rosmarinic Acid C4H low borderline
Scer01G0014530.1 Rosmarinic Acid C4H low borderline
Scer01G0015600.1 Rosmarinic Acid C4H low borderline
Scer01G0017050.1 Rosmarinic Acid C4H medium pass
Scer01G0017380.1 Rosmarinic Acid C4H medium pass
Scer01G0017490.1 Rosmarinic Acid C4H medium pass
Scer01G0018140.1 Rosmarinic Acid C4H low borderline