Secale cereale (secale_cereale)
Imported from atlas release summary for Secale cereale.
3598
Candidate Protein Records
3363
Pathway-Level Records
8560
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
8560
Family-Level Calls
C3'H/CYP98A
7.37%
C4H
7.0%
BAHD
4.87%
POD
4.63%
UGT
4.56%
T3O
4.44%
7DLGT
4.44%
UFGT
4.4%
Other Families
58.29%
More Families (97)
CYP76
335
3.91%
IFS
327
3.82%
F3'H/CYP75B
277
3.24%
4CL
234
2.73%
BR6OX2/CYP85A2
230
2.69%
DWF4/CYP90B1
218
2.55%
F3H
213
2.49%
CYP71
163
1.9%
CODM/T6ODM
119
1.39%
NMT
110
1.29%
STR
109
1.27%
CAD
105
1.23%
SMT1/SMT2/SMT3
103
1.2%
PYKS
100
1.17%
CSE
90
1.05%
CYP90D1
88
1.03%
H6H
87
1.02%
SLS
86
1.0%
PAL
84
0.98%
PMT
74
0.86%
TRI/TRII
73
0.85%
COMT
72
0.84%
TPS
71
0.83%
CAS
69
0.81%
GES
68
0.79%
SGD
68
0.79%
RAS
68
0.79%
CCR
66
0.77%
T16H
65
0.76%
CYP51G1
64
0.75%
G8O/G8H
58
0.68%
ANR
57
0.67%
HCT
56
0.65%
LAC
53
0.62%
16OMT
50
0.58%
NCS
44
0.51%
CHS
43
0.5%
IO
42
0.49%
GS
41
0.48%
FNS
41
0.48%
BBE
40
0.47%
DFR
39
0.46%
F5H/CYP84A
39
0.46%
F3'5'H/CYP75A
38
0.44%
IFR
34
0.4%
CPD/CYP90A1
33
0.39%
BR6OX1/CYP85A1
32
0.37%
COR
25
0.29%
CNMT
24
0.28%
8HGO
21
0.25%
CYP719
21
0.25%
7DLH
19
0.22%
ANS/LDOX
19
0.22%
LAMT
18
0.21%
TYDC_DDC
17
0.2%
TAT
15
0.18%
6OMT_4OMT_SOMT
13
0.15%
SMO1/SMO2
11
0.13%
MVK
11
0.13%
CYP80B1
10
0.12%
CYP80F1
10
0.12%
HPPR
10
0.12%
CPR
9
0.11%
ROT3/CYP90C1
9
0.11%
GGPPS
9
0.11%
AACT
9
0.11%
FPPS
9
0.11%
ADC
8
0.09%
XMT_MXMT_DXMT
8
0.09%
CCoAOMT
8
0.09%
SQS/FDFT1
8
0.09%
TDC
7
0.08%
ODC
6
0.07%
PMK
6
0.07%
MPO
5
0.06%
ISY
5
0.06%
DET2
5
0.06%
HMGS
5
0.06%
FLS
4
0.05%
HYD1
4
0.05%
IDI
4
0.05%
MVD
4
0.05%
CHI
3
0.04%
DWF1
3
0.04%
DWF7
3
0.04%
SQE
3
0.04%
CPI1
3
0.04%
DWF5
3
0.04%
DXS
3
0.04%
HDR/IspH
3
0.04%
HMGR
3
0.04%
FK
2
0.02%
MCT/IspD
2
0.02%
DXR
2
0.02%
CMK/IspE
2
0.02%
HDS/IspG
2
0.02%
MDS/IspF
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 887 | 19 | UGT (380) | View species results |
| Phenylpropanoid pathway | 764 | 12 | POD (385) | View species results |
| Alkaloid pathway | 705 | 20 | 7DLGT (158) | View species results |
| Flavonoid pathway | 533 | 14 | UFGT (361) | View species results |
| Rosmarinic acid pathway | 334 | 7 | C4H (185) | View species results |
| Steroid pathway | 140 | 13 | SMT1/SMT2/SMT3 (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3774 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 541 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Scer04G0047140.1 | Alkaloid | LAMT | medium | borderline |
| Scer05G0019380.1 | Alkaloid | LAMT | medium | borderline |
| Scer05G0037840.1 | Alkaloid | LAMT | medium | borderline |
| Scer06G0030250.1 | Alkaloid | LAMT | medium | borderline |
| Scer06G0038790.1 | Alkaloid | LAMT | medium | borderline |
| Scer07G0050640.1 | Alkaloid | LAMT | medium | borderline |
| Scer07G0050770.1 | Alkaloid | LAMT | medium | borderline |
| ScerGWHASIY000000080000690.1 | Alkaloid | LAMT | medium | borderline |
| ScerGWHASIY000000080010880.1 | Alkaloid | LAMT | medium | borderline |
| Scer02G0003840.1 | Alkaloid | MPO | medium | pass |
| Scer02G0036290.1 | Alkaloid | MPO | medium | pass |
| Scer07G0011990.1 | Alkaloid | MPO | high | pass |
| Scer07G0053110.1 | Alkaloid | MPO | low | borderline |
| ScerGWHASIY000000080014820.1 | Alkaloid | MPO | medium | pass |
| Scer01G0010990.1 | Alkaloid | NCS | low | borderline |
| Scer01G0029150.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0000260.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0002040.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0002250.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0002260.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0005170.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0005190.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0038170.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0053740.1 | Alkaloid | NCS | medium | pass |
| Scer02G0053750.1 | Alkaloid | NCS | medium | pass |
| Scer02G0053770.1 | Alkaloid | NCS | medium | pass |
| Scer02G0058440.1 | Alkaloid | NCS | medium | borderline |
| Scer02G0060410.1 | Alkaloid | NCS | medium | pass |
| Scer02G0060980.1 | Alkaloid | NCS | low | borderline |
| Scer03G0013400.1 | Alkaloid | NCS | medium | borderline |
| Scer03G0055090.1 | Alkaloid | NCS | medium | borderline |
| Scer04G0012740.1 | Alkaloid | NCS | medium | borderline |
| Scer04G0040260.1 | Alkaloid | NCS | medium | borderline |
| Scer05G0053290.1 | Alkaloid | NCS | medium | borderline |
| Scer05G0062730.1 | Alkaloid | NCS | medium | borderline |
| Scer05G0064710.1 | Alkaloid | NCS | medium | borderline |
| Scer05G0065310.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0002470.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0034810.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0034830.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0039590.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0039610.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0043130.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0049920.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0049930.1 | Alkaloid | NCS | medium | borderline |
| Scer06G0053010.1 | Alkaloid | NCS | medium | pass |
| Scer06G0053020.1 | Alkaloid | NCS | medium | pass |
| Scer06G0053110.1 | Alkaloid | NCS | medium | pass |
| Scer06G0053120.1 | Alkaloid | NCS | medium | pass |
| Scer06G0054200.1 | Alkaloid | NCS | medium | pass |