Solanum pimpinellifolium (solanum_pimpinellifolium)
/
Imported from atlas release summary for Solanum pimpinellifolium.
1183
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1183
Candidate Genes
C4H
8.23%
BAHD
5.87%
C3'H/CYP98A
4.49%
4CL
4.32%
POD
3.89%
CYP76
3.66%
F3H
3.37%
UGT
3.34%
Other Families
62.84%
More Families (98)
7DLGT
102
2.94%
IFS
89
2.56%
NMT
84
2.42%
H6H
81
2.33%
T3O
73
2.1%
F3'H/CYP75B
72
2.07%
G8O/G8H
71
2.04%
UFGT
69
1.99%
CODM/T6ODM
62
1.78%
STR
61
1.76%
FNS
61
1.76%
CYP71
59
1.7%
DWF4/CYP90B1
56
1.61%
PAL
48
1.38%
SMT1/SMT2/SMT3
48
1.38%
TRI/TRII
46
1.32%
T16H
46
1.32%
CAD
46
1.32%
BR6OX2/CYP85A2
46
1.32%
LAC
39
1.12%
F5H/CYP84A
38
1.09%
TAT
38
1.09%
TPS
37
1.07%
GES
36
1.04%
CSE
36
1.04%
CAS
33
0.95%
PYKS
29
0.83%
IFR
29
0.83%
GS
27
0.78%
F3'5'H/CYP75A
27
0.78%
HCT
27
0.78%
SLS
24
0.69%
BBE
24
0.69%
COMT
24
0.69%
PMT
23
0.66%
7DLH
22
0.63%
CCR
22
0.63%
CCoAOMT
20
0.58%
ANR
19
0.55%
16OMT
18
0.52%
RAS
18
0.52%
LAMT
17
0.49%
ANS/LDOX
17
0.49%
SGD
16
0.46%
CPD/CYP90A1
16
0.46%
TYDC_DDC
14
0.4%
CYP90D1
14
0.4%
NCS
13
0.37%
8HGO
13
0.37%
IO
12
0.35%
SQS/FDFT1
11
0.32%
BR6OX1/CYP85A1
11
0.32%
CNMT
10
0.29%
DFR
10
0.29%
ROT3/CYP90C1
10
0.29%
FPPS
10
0.29%
CYP80B1
9
0.26%
COR
8
0.23%
CHS
8
0.23%
MPO
7
0.2%
CYP719
7
0.2%
CPR
7
0.2%
GGPPS
7
0.2%
HPPR
6
0.17%
MVD
6
0.17%
AACT
6
0.17%
XMT_MXMT_DXMT
5
0.14%
CYP80F1
5
0.14%
ISY
5
0.14%
TDC
5
0.14%
CHI
5
0.14%
DET2
5
0.14%
ODC
4
0.12%
CYP51G1
4
0.12%
SMO1/SMO2
4
0.12%
SQE
4
0.12%
DXS
4
0.12%
HMGR
4
0.12%
6OMT_4OMT_SOMT
3
0.09%
DWF7
3
0.09%
MVK
3
0.09%
HMGS
3
0.09%
DWF5
2
0.06%
DWF1
2
0.06%
HYD1
2
0.06%
FK
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
ADC
1
0.03%
FLS
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
MCT/IspD
1
0.03%
HDR/IspH
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
GPPS
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 336 | 19 | BAHD (132) | View species results |
| Phenylpropanoid pathway | 285 | 12 | POD (112) | View species results |
| Alkaloid pathway | 259 | 23 | NMT (38) | View species results |
| Flavonoid pathway | 135 | 12 | UFGT (50) | View species results |
| Rosmarinic acid pathway | 102 | 7 | 4CL (32) | View species results |
| Steroid pathway | 66 | 12 | SMT1/SMT2/SMT3 (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1280 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 249 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| solanum_pimpinellifolium_SPIMP01g0020860 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP01g0025210 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| solanum_pimpinellifolium_SPIMP01g0034890 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| solanum_pimpinellifolium_SPIMP01g0037910 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| solanum_pimpinellifolium_SPIMP01g0047490 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| solanum_pimpinellifolium_SPIMP02g0056830 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0056840 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0057860 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0064200 | Phenylpropanoid | 4CL | low | borderline | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| solanum_pimpinellifolium_SPIMP02g0071020 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0071030 | Phenylpropanoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0072710 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0072720 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0072750 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP02g0078720 | Phenylpropanoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| solanum_pimpinellifolium_SPIMP02g0084540 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| solanum_pimpinellifolium_SPIMP03g0084660 | Phenylpropanoid | 4CL | low | borderline | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| solanum_pimpinellifolium_SPIMP03g0088320 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| solanum_pimpinellifolium_SPIMP03g0089510 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP03g0089620 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP03g0090020 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP03g0104720 | Phenylpropanoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| solanum_pimpinellifolium_SPIMP03g0107080 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| solanum_pimpinellifolium_SPIMP03g0114300 | Phenylpropanoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| solanum_pimpinellifolium_SPIMP04g0131880 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| solanum_pimpinellifolium_SPIMP04g0148140 | Phenylpropanoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| solanum_pimpinellifolium_SPIMP06g0180170 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP06g0184010 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| solanum_pimpinellifolium_SPIMP06g0195560 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| solanum_pimpinellifolium_SPIMP07g0209700 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| solanum_pimpinellifolium_SPIMP07g0212760 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| solanum_pimpinellifolium_SPIMP07g0221530 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP07g0221540 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP07g0221560 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP07g0222210 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| solanum_pimpinellifolium_SPIMP08g0251450 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP08g0251460 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP08g0252000 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| solanum_pimpinellifolium_SPIMP08g0257780 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| solanum_pimpinellifolium_SPIMP09g0280680 | Phenylpropanoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| solanum_pimpinellifolium_SPIMP09g0285640 | Phenylpropanoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| solanum_pimpinellifolium_SPIMP10g0297710 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| solanum_pimpinellifolium_SPIMP11g0316770 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| solanum_pimpinellifolium_SPIMP11g0322820 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| solanum_pimpinellifolium_SPIMP11g0334700 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| solanum_pimpinellifolium_SPIMP12g0341390 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| solanum_pimpinellifolium_SPIMP12g0355540 | Phenylpropanoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| solanum_pimpinellifolium_SPIMP12g0356430 | Phenylpropanoid | 4CL | low | borderline | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| solanum_pimpinellifolium_SPIMP12g0361300 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| solanum_pimpinellifolium_SPIMP12g0363980 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |