Solanum pimpinellifolium (solanum_pimpinellifolium)
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Imported from atlas release summary for Solanum pimpinellifolium.
1183
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1183
Candidate Genes
C4H
8.23%
BAHD
5.87%
C3'H/CYP98A
4.49%
4CL
4.32%
POD
3.89%
CYP76
3.66%
F3H
3.37%
UGT
3.34%
Other Families
62.84%
More Families (98)
7DLGT
102
2.94%
IFS
89
2.56%
NMT
84
2.42%
H6H
81
2.33%
T3O
73
2.1%
F3'H/CYP75B
72
2.07%
G8O/G8H
71
2.04%
UFGT
69
1.99%
CODM/T6ODM
62
1.78%
STR
61
1.76%
FNS
61
1.76%
CYP71
59
1.7%
DWF4/CYP90B1
56
1.61%
PAL
48
1.38%
SMT1/SMT2/SMT3
48
1.38%
TRI/TRII
46
1.32%
T16H
46
1.32%
CAD
46
1.32%
BR6OX2/CYP85A2
46
1.32%
LAC
39
1.12%
F5H/CYP84A
38
1.09%
TAT
38
1.09%
TPS
37
1.07%
GES
36
1.04%
CSE
36
1.04%
CAS
33
0.95%
PYKS
29
0.83%
IFR
29
0.83%
GS
27
0.78%
F3'5'H/CYP75A
27
0.78%
HCT
27
0.78%
SLS
24
0.69%
BBE
24
0.69%
COMT
24
0.69%
PMT
23
0.66%
7DLH
22
0.63%
CCR
22
0.63%
CCoAOMT
20
0.58%
ANR
19
0.55%
16OMT
18
0.52%
RAS
18
0.52%
LAMT
17
0.49%
ANS/LDOX
17
0.49%
SGD
16
0.46%
CPD/CYP90A1
16
0.46%
TYDC_DDC
14
0.4%
CYP90D1
14
0.4%
NCS
13
0.37%
8HGO
13
0.37%
IO
12
0.35%
SQS/FDFT1
11
0.32%
BR6OX1/CYP85A1
11
0.32%
CNMT
10
0.29%
DFR
10
0.29%
ROT3/CYP90C1
10
0.29%
FPPS
10
0.29%
CYP80B1
9
0.26%
COR
8
0.23%
CHS
8
0.23%
MPO
7
0.2%
CYP719
7
0.2%
CPR
7
0.2%
GGPPS
7
0.2%
HPPR
6
0.17%
MVD
6
0.17%
AACT
6
0.17%
XMT_MXMT_DXMT
5
0.14%
CYP80F1
5
0.14%
ISY
5
0.14%
TDC
5
0.14%
CHI
5
0.14%
DET2
5
0.14%
ODC
4
0.12%
CYP51G1
4
0.12%
SMO1/SMO2
4
0.12%
SQE
4
0.12%
DXS
4
0.12%
HMGR
4
0.12%
6OMT_4OMT_SOMT
3
0.09%
DWF7
3
0.09%
MVK
3
0.09%
HMGS
3
0.09%
DWF5
2
0.06%
DWF1
2
0.06%
HYD1
2
0.06%
FK
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
ADC
1
0.03%
FLS
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
MCT/IspD
1
0.03%
HDR/IspH
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
GPPS
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 336 | 19 | BAHD (132) | View species results |
| Phenylpropanoid pathway | 285 | 12 | POD (112) | View species results |
| Alkaloid pathway | 259 | 23 | NMT (38) | View species results |
| Flavonoid pathway | 135 | 12 | UFGT (50) | View species results |
| Rosmarinic acid pathway | 102 | 7 | 4CL (32) | View species results |
| Steroid pathway | 66 | 12 | SMT1/SMT2/SMT3 (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1280 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 249 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANS/LDOX
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| solanum_pimpinellifolium_SPIMP01g0013550 | Flavonoid | ANS/LDOX | low | borderline | ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC |
| solanum_pimpinellifolium_SPIMP01g0016500 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP01g0019730 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP01g0033760 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP02g0065630 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP04g0133420 | Flavonoid | ANS/LDOX | low | borderline | ANS_LDOX__00003__sp_O04274_LDOX_PERFR |
| solanum_pimpinellifolium_SPIMP05g0173420 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP06g0195130 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP07g0223490 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP07g0228680 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP07g0228730 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP07g0228740 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP09g0268680 | Flavonoid | ANS/LDOX | medium | pass | ANS_LDOX__00005__sp_Q96323_LDOX_ARATH |
| solanum_pimpinellifolium_SPIMP09g0282690 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP10g0295320 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP11g0336960 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| solanum_pimpinellifolium_SPIMP12g0348690 | Flavonoid | ANS/LDOX | medium | pass | ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC |