PlantSME Plant secondary metabolism enzyme database

Solanum pimpinellifolium (solanum_pimpinellifolium)

/

Imported from atlas release summary for Solanum pimpinellifolium.

1183
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.4% Phenylpropanoid pathway 24.09% Alkaloid pathway 21.89% Flavonoid pathway 11.41% Rosmarinic acid pathway 8.62% Steroid pathway 5.58%
Family Distribution
C4H 8.23% BAHD 5.87% C3'H/CYP98A 4.49% 4CL 4.32% POD 3.89% CYP76 3.66% F3H 3.37% UGT 3.34%
Other Families 62.84%
More Families (98)
7DLGT 102 2.94% IFS 89 2.56% NMT 84 2.42% H6H 81 2.33% T3O 73 2.1% F3'H/CYP75B 72 2.07% G8O/G8H 71 2.04% UFGT 69 1.99% CODM/T6ODM 62 1.78% STR 61 1.76% FNS 61 1.76% CYP71 59 1.7% DWF4/CYP90B1 56 1.61% PAL 48 1.38% SMT1/SMT2/SMT3 48 1.38% TRI/TRII 46 1.32% T16H 46 1.32% CAD 46 1.32% BR6OX2/CYP85A2 46 1.32% LAC 39 1.12% F5H/CYP84A 38 1.09% TAT 38 1.09% TPS 37 1.07% GES 36 1.04% CSE 36 1.04% CAS 33 0.95% PYKS 29 0.83% IFR 29 0.83% GS 27 0.78% F3'5'H/CYP75A 27 0.78% HCT 27 0.78% SLS 24 0.69% BBE 24 0.69% COMT 24 0.69% PMT 23 0.66% 7DLH 22 0.63% CCR 22 0.63% CCoAOMT 20 0.58% ANR 19 0.55% 16OMT 18 0.52% RAS 18 0.52% LAMT 17 0.49% ANS/LDOX 17 0.49% SGD 16 0.46% CPD/CYP90A1 16 0.46% TYDC_DDC 14 0.4% CYP90D1 14 0.4% NCS 13 0.37% 8HGO 13 0.37% IO 12 0.35% SQS/FDFT1 11 0.32% BR6OX1/CYP85A1 11 0.32% CNMT 10 0.29% DFR 10 0.29% ROT3/CYP90C1 10 0.29% FPPS 10 0.29% CYP80B1 9 0.26% COR 8 0.23% CHS 8 0.23% MPO 7 0.2% CYP719 7 0.2% CPR 7 0.2% GGPPS 7 0.2% HPPR 6 0.17% MVD 6 0.17% AACT 6 0.17% XMT_MXMT_DXMT 5 0.14% CYP80F1 5 0.14% ISY 5 0.14% TDC 5 0.14% CHI 5 0.14% DET2 5 0.14% ODC 4 0.12% CYP51G1 4 0.12% SMO1/SMO2 4 0.12% SQE 4 0.12% DXS 4 0.12% HMGR 4 0.12% 6OMT_4OMT_SOMT 3 0.09% DWF7 3 0.09% MVK 3 0.09% HMGS 3 0.09% DWF5 2 0.06% DWF1 2 0.06% HYD1 2 0.06% FK 2 0.06% IDI 2 0.06% PMK 2 0.06% ADC 1 0.03% FLS 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% MCT/IspD 1 0.03% HDR/IspH 1 0.03% DXR 1 0.03% MDS/IspF 1 0.03% GPPS 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 336 19 BAHD (132) View species results
Phenylpropanoid pathway 285 12 POD (112) View species results
Alkaloid pathway 259 23 NMT (38) View species results
Flavonoid pathway 135 12 UFGT (50) View species results
Rosmarinic acid pathway 102 7 4CL (32) View species results
Steroid pathway 66 12 SMT1/SMT2/SMT3 (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1280 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 249 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
Reset
Gene Pathway Family Confidence Status Best Target
solanum_pimpinellifolium_SPIMP01g0048700 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
solanum_pimpinellifolium_SPIMP03g0102010 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
solanum_pimpinellifolium_SPIMP03g0105820 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
solanum_pimpinellifolium_SPIMP04g0122240 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
solanum_pimpinellifolium_SPIMP05g0153480 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
solanum_pimpinellifolium_SPIMP09g0264280 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
solanum_pimpinellifolium_SPIMP09g0266280 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
solanum_pimpinellifolium_SPIMP12g0355550 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO