PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
TRsanscaffold_100016070 Alkaloid 16OMT medium borderline
TRsanscaffold_40138730 Alkaloid 16OMT medium borderline
TRsanscaffold_60167370 Alkaloid 16OMT low borderline
TRsanscaffold_40123810 Alkaloid 6OMT_4OMT_SOMT medium borderline
TRsanscaffold_50161500 Alkaloid 6OMT_4OMT_SOMT low borderline
TRsanscaffold_20065210 Alkaloid 7DLGT low borderline
TRsanscaffold_20065900 Alkaloid 7DLGT medium pass
TRsanscaffold_20069390 Alkaloid 7DLGT low borderline
TRsanscaffold_20083860 Alkaloid 7DLGT low borderline
TRsanscaffold_20101770 Alkaloid 7DLGT low borderline
TRsanscaffold_30112830 Alkaloid 7DLGT medium pass
TRsanscaffold_40124400 Alkaloid 7DLGT low borderline
TRsanscaffold_50156120 Alkaloid 7DLGT low borderline
TRsanscaffold_50158310 Alkaloid 7DLGT low borderline
TRsanscaffold_60164280 Alkaloid 7DLGT low borderline
TRsanscaffold_60176860 Alkaloid 7DLGT medium pass
TRsanscaffold_60177850 Alkaloid 7DLGT low borderline
TRsanscaffold_70188000 Alkaloid 7DLGT low borderline
TRsanscaffold_70197170 Alkaloid 7DLGT low borderline
TRsanscaffold_80210530 Alkaloid 7DLGT low borderline
TRsanscaffold_90225690 Alkaloid 7DLGT medium pass
TRsanscaffold_20073730 Alkaloid 7DLH medium borderline
TRsanscaffold_40139540 Alkaloid 7DLH medium borderline
TRsanscaffold_100018910 Alkaloid 8HGO medium borderline
TRsanscaffold_100019180 Alkaloid 8HGO medium borderline
TRsanscaffold_100019260 Alkaloid 8HGO medium borderline
TRsanscaffold_100019280 Alkaloid 8HGO medium borderline
TRsanscaffold_20065960 Alkaloid 8HGO medium borderline
TRsanscaffold_20066510 Alkaloid 8HGO low borderline
TRsanscaffold_20070240 Alkaloid 8HGO medium borderline
TRsanscaffold_20100790 Alkaloid 8HGO low borderline
TRsanscaffold_40120950 Alkaloid 8HGO medium borderline
TRsanscaffold_40142490 Alkaloid 8HGO medium borderline
TRsanscaffold_50156150 Alkaloid 8HGO low borderline
TRsanscaffold_50156270 Alkaloid 8HGO low borderline
TRsanscaffold_60174220 Alkaloid 8HGO medium borderline
TRsanscaffold_70189880 Alkaloid 8HGO medium borderline
TRsanscaffold_80200760 Alkaloid 8HGO low borderline
TRsanscaffold_80208360 Alkaloid 8HGO medium borderline
TRsanscaffold_90218670 Alkaloid 8HGO medium borderline
TRsanscaffold_90219970 Alkaloid 8HGO medium borderline
TRsanscaffold_160059420 Alkaloid ADC medium pass
TRsanscaffold_50151870 Alkaloid ADC low borderline
TRsanscaffold_90213970 Alkaloid ADC medium pass
TRsanscaffold_10005710 Alkaloid BBE low borderline
TRsanscaffold_30115750 Alkaloid BBE low borderline
TRsanscaffold_40132180 Alkaloid BBE low borderline
TRsanscaffold_90222920 Alkaloid BBE low borderline
TRsanscaffold_100013360 Alkaloid CNMT medium pass
TRsanscaffold_160058770 Alkaloid CNMT low borderline