PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status
TRsanscaffold_10000600 Flavonoid 4CL medium pass
TRsanscaffold_100039860 Flavonoid 4CL low borderline
TRsanscaffold_10007890 Flavonoid 4CL medium pass
TRsanscaffold_10007980 Flavonoid 4CL medium pass
TRsanscaffold_110041990 Flavonoid 4CL low borderline
TRsanscaffold_120051830 Flavonoid 4CL low borderline
TRsanscaffold_20070540 Flavonoid 4CL medium pass
TRsanscaffold_30104990 Flavonoid 4CL low borderline
TRsanscaffold_40130210 Flavonoid 4CL low borderline
TRsanscaffold_60164720 Flavonoid 4CL low borderline
TRsanscaffold_60168610 Flavonoid 4CL low borderline
TRsanscaffold_60180720 Flavonoid 4CL medium pass
TRsanscaffold_60180730 Flavonoid 4CL medium pass
TRsanscaffold_60180750 Flavonoid 4CL medium pass
TRsanscaffold_60182910 Flavonoid 4CL medium pass
TRsanscaffold_60183320 Flavonoid 4CL low borderline
TRsanscaffold_70189890 Flavonoid 4CL low borderline
TRsanscaffold_70195810 Flavonoid 4CL low borderline
TRsanscaffold_80210280 Flavonoid 4CL low borderline
TRsanscaffold_90216640 Flavonoid 4CL medium pass
TRsanscaffold_90217590 Flavonoid 4CL low borderline
TRsanscaffold_90223930 Flavonoid 4CL medium pass
TRsanscaffold_10000600 Phenylpropanoid 4CL medium pass
TRsanscaffold_100039860 Phenylpropanoid 4CL low borderline
TRsanscaffold_10007890 Phenylpropanoid 4CL medium pass
TRsanscaffold_10007980 Phenylpropanoid 4CL medium pass
TRsanscaffold_110041990 Phenylpropanoid 4CL low borderline
TRsanscaffold_120051830 Phenylpropanoid 4CL low borderline
TRsanscaffold_20070540 Phenylpropanoid 4CL medium pass
TRsanscaffold_30104990 Phenylpropanoid 4CL low borderline
TRsanscaffold_40130210 Phenylpropanoid 4CL low borderline
TRsanscaffold_60164720 Phenylpropanoid 4CL low borderline
TRsanscaffold_60168610 Phenylpropanoid 4CL low borderline
TRsanscaffold_60180720 Phenylpropanoid 4CL medium pass
TRsanscaffold_60180730 Phenylpropanoid 4CL medium pass
TRsanscaffold_60180750 Phenylpropanoid 4CL medium pass
TRsanscaffold_60182910 Phenylpropanoid 4CL medium pass
TRsanscaffold_60183320 Phenylpropanoid 4CL low borderline
TRsanscaffold_70189890 Phenylpropanoid 4CL low borderline
TRsanscaffold_70195810 Phenylpropanoid 4CL low borderline
TRsanscaffold_80210280 Phenylpropanoid 4CL low borderline
TRsanscaffold_90216640 Phenylpropanoid 4CL medium pass
TRsanscaffold_90217590 Phenylpropanoid 4CL low borderline
TRsanscaffold_90223930 Phenylpropanoid 4CL medium pass
TRsanscaffold_10000600 Rosmarinic Acid 4CL medium pass
TRsanscaffold_100039860 Rosmarinic Acid 4CL low borderline
TRsanscaffold_10007890 Rosmarinic Acid 4CL medium pass
TRsanscaffold_10007980 Rosmarinic Acid 4CL medium pass
TRsanscaffold_110041990 Rosmarinic Acid 4CL low borderline
TRsanscaffold_120051830 Rosmarinic Acid 4CL low borderline