Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)
Imported from atlas release summary for Trocholejeunea sandvicensis.
526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
526
Candidate Genes
C4H
6.66%
BAHD
6.24%
C3'H/CYP98A
6.18%
CYP76
6.0%
POD
4.72%
T3O
4.06%
IFS
4.06%
4CL
4.0%
Other Families
58.09%
More Families (94)
NMT
53
3.21%
GS
51
3.09%
STR
48
2.91%
BR6OX2/CYP85A2
47
2.85%
IFR
40
2.42%
F3'H/CYP75B
37
2.24%
DWF4/CYP90B1
32
1.94%
CAD
30
1.82%
F3H
28
1.7%
RAS
23
1.39%
UGT
22
1.33%
LAMT
21
1.27%
TRI/TRII
21
1.27%
PAL
21
1.27%
G8O/G8H
20
1.21%
HCT
20
1.21%
SMT1/SMT2/SMT3
20
1.21%
8HGO
18
1.09%
T16H
17
1.03%
CODM/T6ODM
17
1.03%
COMT
17
1.03%
7DLGT
16
0.97%
IO
14
0.85%
F3'5'H/CYP75A
12
0.73%
FNS
12
0.73%
UFGT
12
0.73%
CYP90D1
12
0.73%
CPD/CYP90A1
12
0.73%
H6H
11
0.67%
ANR
11
0.67%
F5H/CYP84A
11
0.67%
PYKS
10
0.61%
LAC
10
0.61%
CAS
10
0.61%
SGD
9
0.55%
COR
7
0.42%
CSE
7
0.42%
TAT
7
0.42%
BR6OX1/CYP85A1
7
0.42%
TPS
7
0.42%
CYP71
7
0.42%
DXS
7
0.42%
CHS
6
0.36%
CCR
6
0.36%
GGPPS
6
0.36%
CNMT
5
0.3%
SLS
5
0.3%
HPPR
5
0.3%
DET2
5
0.3%
AACT
5
0.3%
GES
4
0.24%
BBE
4
0.24%
PMT
4
0.24%
ISY
4
0.24%
CPR
4
0.24%
SQS/FDFT1
4
0.24%
MVK
4
0.24%
FPPS
4
0.24%
16OMT
3
0.18%
MPO
3
0.18%
ADC
3
0.18%
XMT_MXMT_DXMT
3
0.18%
CYP80B1
3
0.18%
DFR
3
0.18%
CCoAOMT
3
0.18%
DWF1
3
0.18%
DWF5
3
0.18%
SMO1/SMO2
3
0.18%
HYD1
3
0.18%
MVD
3
0.18%
MCT/IspD
3
0.18%
NCS
2
0.12%
7DLH
2
0.12%
6OMT_4OMT_SOMT
2
0.12%
SQE
2
0.12%
CPI1
2
0.12%
HDR/IspH
2
0.12%
IDI
2
0.12%
PMK
2
0.12%
CYP719
1
0.06%
TDC
1
0.06%
TYDC_DDC
1
0.06%
ANS/LDOX
1
0.06%
CHI
1
0.06%
ROT3/CYP90C1
1
0.06%
CYP51G1
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
HDS/IspG
1
0.06%
HMGR
1
0.06%
DXR
1
0.06%
CMK/IspE
1
0.06%
MDS/IspF
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 144 | 10 | POD (73) | View species results |
| Terpenoid pathway | 118 | 19 | BAHD (52) | View species results |
| Alkaloid pathway | 115 | 18 | NMT (19) | View species results |
| Rosmarinic acid pathway | 59 | 7 | C4H (31) | View species results |
| Flavonoid pathway | 52 | 9 | IFR (17) | View species results |
| Steroid pathway | 38 | 12 | SMT1/SMT2/SMT3 (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 686 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 146 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| TRsanscaffold_10000600 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_100039860 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_10007890 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_10007980 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_110041990 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_120051830 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_20070540 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_30104990 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_40130210 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_60164720 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_60168610 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_60180720 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_60180730 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_60180750 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_60182910 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_60183320 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_70189890 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_70195810 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_80210280 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_90216640 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_90217590 | Flavonoid | 4CL | low | borderline |
| TRsanscaffold_90223930 | Flavonoid | 4CL | medium | pass |
| TRsanscaffold_100034450 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_20069290 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_20093040 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_20097430 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_30110000 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_50159830 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_50159860 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_50159870 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_60176030 | Flavonoid | ANR | low | borderline |
| TRsanscaffold_70197850 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_90213910 | Flavonoid | ANR | medium | borderline |
| TRsanscaffold_60180670 | Flavonoid | ANS/LDOX | medium | borderline |
| TRsanscaffold_20078200 | Flavonoid | C4H | medium | borderline |
| TRsanscaffold_50153870 | Flavonoid | C4H | low | borderline |
| TRsanscaffold_80201510 | Flavonoid | CHI | medium | pass |
| TRsanscaffold_20078000 | Flavonoid | CHS | medium | pass |
| TRsanscaffold_20082960 | Flavonoid | CHS | low | borderline |
| TRsanscaffold_40126980 | Flavonoid | CHS | medium | pass |
| TRsanscaffold_40126990 | Flavonoid | CHS | medium | pass |
| TRsanscaffold_40144330 | Flavonoid | CHS | medium | pass |
| TRsanscaffold_90225740 | Flavonoid | CHS | medium | pass |
| TRsanscaffold_100020200 | Flavonoid | DFR | medium | borderline |
| TRsanscaffold_110049100 | Flavonoid | DFR | medium | borderline |
| TRsanscaffold_140056310 | Flavonoid | DFR | low | borderline |
| TRsanscaffold_100033800 | Flavonoid | F3'5'H/CYP75A | low | borderline |
| TRsanscaffold_10009320 | Flavonoid | F3'5'H/CYP75A | medium | borderline |
| TRsanscaffold_110042600 | Flavonoid | F3'5'H/CYP75A | medium | pass |
| TRsanscaffold_20099910 | Flavonoid | F3'5'H/CYP75A | medium | borderline |