PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
TRsanscaffold_100017540 Flavonoid F3H medium borderline
TRsanscaffold_100017550 Flavonoid F3H medium borderline
TRsanscaffold_100020020 Flavonoid F3H medium pass
TRsanscaffold_110042840 Flavonoid F3H medium pass
TRsanscaffold_110046850 Flavonoid F3H low borderline
TRsanscaffold_110048950 Flavonoid F3H medium borderline
TRsanscaffold_110049090 Flavonoid F3H medium borderline
TRsanscaffold_130055760 Flavonoid F3H medium borderline
TRsanscaffold_20074670 Flavonoid F3H medium borderline
TRsanscaffold_20080000 Flavonoid F3H medium borderline
TRsanscaffold_20088800 Flavonoid F3H medium borderline
TRsanscaffold_20088810 Flavonoid F3H medium borderline
TRsanscaffold_20092500 Flavonoid F3H medium borderline
TRsanscaffold_20099420 Flavonoid F3H medium borderline
TRsanscaffold_30109400 Flavonoid F3H medium borderline
TRsanscaffold_30117320 Flavonoid F3H low borderline
TRsanscaffold_40127220 Flavonoid F3H low borderline
TRsanscaffold_40135980 Flavonoid F3H low borderline
TRsanscaffold_40136090 Flavonoid F3H low borderline
TRsanscaffold_40144250 Flavonoid F3H medium borderline
TRsanscaffold_50148730 Flavonoid F3H medium borderline
TRsanscaffold_50153030 Flavonoid F3H medium borderline
TRsanscaffold_50154850 Flavonoid F3H medium borderline
TRsanscaffold_60163220 Flavonoid F3H medium borderline
TRsanscaffold_60178930 Flavonoid F3H low borderline
TRsanscaffold_70187410 Flavonoid F3H low borderline
TRsanscaffold_90216320 Flavonoid F3H medium borderline
TRsanscaffold_90218090 Flavonoid F3H medium borderline