Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)
Imported from atlas release summary for Trocholejeunea sandvicensis.
526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
526
Candidate Genes
C4H
6.66%
BAHD
6.24%
C3'H/CYP98A
6.18%
CYP76
6.0%
POD
4.72%
T3O
4.06%
IFS
4.06%
4CL
4.0%
Other Families
58.09%
More Families (94)
NMT
53
3.21%
GS
51
3.09%
STR
48
2.91%
BR6OX2/CYP85A2
47
2.85%
IFR
40
2.42%
F3'H/CYP75B
37
2.24%
DWF4/CYP90B1
32
1.94%
CAD
30
1.82%
F3H
28
1.7%
RAS
23
1.39%
UGT
22
1.33%
LAMT
21
1.27%
TRI/TRII
21
1.27%
PAL
21
1.27%
G8O/G8H
20
1.21%
HCT
20
1.21%
SMT1/SMT2/SMT3
20
1.21%
8HGO
18
1.09%
T16H
17
1.03%
CODM/T6ODM
17
1.03%
COMT
17
1.03%
7DLGT
16
0.97%
IO
14
0.85%
F3'5'H/CYP75A
12
0.73%
FNS
12
0.73%
UFGT
12
0.73%
CYP90D1
12
0.73%
CPD/CYP90A1
12
0.73%
H6H
11
0.67%
ANR
11
0.67%
F5H/CYP84A
11
0.67%
PYKS
10
0.61%
LAC
10
0.61%
CAS
10
0.61%
SGD
9
0.55%
COR
7
0.42%
CSE
7
0.42%
TAT
7
0.42%
BR6OX1/CYP85A1
7
0.42%
TPS
7
0.42%
CYP71
7
0.42%
DXS
7
0.42%
CHS
6
0.36%
CCR
6
0.36%
GGPPS
6
0.36%
CNMT
5
0.3%
SLS
5
0.3%
HPPR
5
0.3%
DET2
5
0.3%
AACT
5
0.3%
GES
4
0.24%
BBE
4
0.24%
PMT
4
0.24%
ISY
4
0.24%
CPR
4
0.24%
SQS/FDFT1
4
0.24%
MVK
4
0.24%
FPPS
4
0.24%
16OMT
3
0.18%
MPO
3
0.18%
ADC
3
0.18%
XMT_MXMT_DXMT
3
0.18%
CYP80B1
3
0.18%
DFR
3
0.18%
CCoAOMT
3
0.18%
DWF1
3
0.18%
DWF5
3
0.18%
SMO1/SMO2
3
0.18%
HYD1
3
0.18%
MVD
3
0.18%
MCT/IspD
3
0.18%
NCS
2
0.12%
7DLH
2
0.12%
6OMT_4OMT_SOMT
2
0.12%
SQE
2
0.12%
CPI1
2
0.12%
HDR/IspH
2
0.12%
IDI
2
0.12%
PMK
2
0.12%
CYP719
1
0.06%
TDC
1
0.06%
TYDC_DDC
1
0.06%
ANS/LDOX
1
0.06%
CHI
1
0.06%
ROT3/CYP90C1
1
0.06%
CYP51G1
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
HDS/IspG
1
0.06%
HMGR
1
0.06%
DXR
1
0.06%
CMK/IspE
1
0.06%
MDS/IspF
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 144 | 10 | POD (73) | View species results |
| Terpenoid pathway | 118 | 19 | BAHD (52) | View species results |
| Alkaloid pathway | 115 | 18 | NMT (19) | View species results |
| Rosmarinic acid pathway | 59 | 7 | C4H (31) | View species results |
| Flavonoid pathway | 52 | 9 | IFR (17) | View species results |
| Steroid pathway | 38 | 12 | SMT1/SMT2/SMT3 (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 686 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 146 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| TRsanscaffold_100013070 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TRsanscaffold_10001550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_100016420 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TRsanscaffold_100020390 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_100026580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_100026610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_10002860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_100029780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_100029900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_10004730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_10004740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_110042310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_110042330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_110043650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_120050810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_130055660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_20068200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_20075490 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_20077290 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_20079740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_20094880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_30113730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_30114050 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TRsanscaffold_30116550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_40121200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_40129730 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_40133270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_40136740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_40138430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_50147500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_50150230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_50150250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_50154700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_50161460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_60161880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_60168040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_60169460 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_60171620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_60184310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_80199610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_80210020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_80211820 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_80211830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_80211850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_90214290 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TRsanscaffold_90214650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_90224810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TRsanscaffold_90224890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |