PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
TRsanscaffold_100014290 Alkaloid T16H medium borderline
TRsanscaffold_100014680 Alkaloid T16H medium borderline
TRsanscaffold_10006290 Alkaloid T16H medium borderline
TRsanscaffold_10007260 Alkaloid T16H medium borderline
TRsanscaffold_20072700 Alkaloid T16H medium borderline
TRsanscaffold_20089450 Alkaloid T16H low borderline
TRsanscaffold_20092810 Alkaloid T16H medium borderline
TRsanscaffold_20094690 Alkaloid T16H medium borderline
TRsanscaffold_30107000 Alkaloid T16H medium borderline
TRsanscaffold_30108720 Alkaloid T16H medium borderline
TRsanscaffold_40132850 Alkaloid T16H medium borderline
TRsanscaffold_40137730 Alkaloid T16H medium borderline
TRsanscaffold_40139670 Alkaloid T16H low borderline
TRsanscaffold_50152910 Alkaloid T16H low borderline
TRsanscaffold_50159500 Alkaloid T16H medium borderline
TRsanscaffold_60166130 Alkaloid T16H medium borderline
TRsanscaffold_80205660 Alkaloid T16H medium borderline