PlantSME Plant secondary metabolism enzyme database

Trocholejeunea sandvicensis (trocholejeunea_sandvicensis)

Imported from atlas release summary for Trocholejeunea sandvicensis.

526
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.38% Terpenoid pathway 22.43% Alkaloid pathway 21.86% Rosmarinic acid pathway 11.22% Flavonoid pathway 9.89% Steroid pathway 7.22%
Family Distribution
C4H 6.66% BAHD 6.24% C3'H/CYP98A 6.18% CYP76 6.0% POD 4.72% T3O 4.06% IFS 4.06% 4CL 4.0%
Other Families 58.09%
More Families (94)
NMT 53 3.21% GS 51 3.09% STR 48 2.91% BR6OX2/CYP85A2 47 2.85% IFR 40 2.42% F3'H/CYP75B 37 2.24% DWF4/CYP90B1 32 1.94% CAD 30 1.82% F3H 28 1.7% RAS 23 1.39% UGT 22 1.33% LAMT 21 1.27% TRI/TRII 21 1.27% PAL 21 1.27% G8O/G8H 20 1.21% HCT 20 1.21% SMT1/SMT2/SMT3 20 1.21% 8HGO 18 1.09% T16H 17 1.03% CODM/T6ODM 17 1.03% COMT 17 1.03% 7DLGT 16 0.97% IO 14 0.85% F3'5'H/CYP75A 12 0.73% FNS 12 0.73% UFGT 12 0.73% CYP90D1 12 0.73% CPD/CYP90A1 12 0.73% H6H 11 0.67% ANR 11 0.67% F5H/CYP84A 11 0.67% PYKS 10 0.61% LAC 10 0.61% CAS 10 0.61% SGD 9 0.55% COR 7 0.42% CSE 7 0.42% TAT 7 0.42% BR6OX1/CYP85A1 7 0.42% TPS 7 0.42% CYP71 7 0.42% DXS 7 0.42% CHS 6 0.36% CCR 6 0.36% GGPPS 6 0.36% CNMT 5 0.3% SLS 5 0.3% HPPR 5 0.3% DET2 5 0.3% AACT 5 0.3% GES 4 0.24% BBE 4 0.24% PMT 4 0.24% ISY 4 0.24% CPR 4 0.24% SQS/FDFT1 4 0.24% MVK 4 0.24% FPPS 4 0.24% 16OMT 3 0.18% MPO 3 0.18% ADC 3 0.18% XMT_MXMT_DXMT 3 0.18% CYP80B1 3 0.18% DFR 3 0.18% CCoAOMT 3 0.18% DWF1 3 0.18% DWF5 3 0.18% SMO1/SMO2 3 0.18% HYD1 3 0.18% MVD 3 0.18% MCT/IspD 3 0.18% NCS 2 0.12% 7DLH 2 0.12% 6OMT_4OMT_SOMT 2 0.12% SQE 2 0.12% CPI1 2 0.12% HDR/IspH 2 0.12% IDI 2 0.12% PMK 2 0.12% CYP719 1 0.06% TDC 1 0.06% TYDC_DDC 1 0.06% ANS/LDOX 1 0.06% CHI 1 0.06% ROT3/CYP90C1 1 0.06% CYP51G1 1 0.06% DWF7 1 0.06% FK 1 0.06% HDS/IspG 1 0.06% HMGR 1 0.06% DXR 1 0.06% CMK/IspE 1 0.06% MDS/IspF 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 144 10 POD (73) View species results
Terpenoid pathway 118 19 BAHD (52) View species results
Alkaloid pathway 115 18 NMT (19) View species results
Rosmarinic acid pathway 59 7 C4H (31) View species results
Flavonoid pathway 52 9 IFR (17) View species results
Steroid pathway 38 12 SMT1/SMT2/SMT3 (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 686 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 146 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
TRsanscaffold_100031920 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
TRsanscaffold_100034050 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TRsanscaffold_100034940 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TRsanscaffold_100035270 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
TRsanscaffold_20073770 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
TRsanscaffold_20095260 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
TRsanscaffold_30105510 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
TRsanscaffold_40144910 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
TRsanscaffold_50149480 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
TRsanscaffold_90215860 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH