PlantSME Plant secondary metabolism enzyme database

Brassica juncea (brassica_juncea)

Imported from atlas release summary for Brassica juncea.

3334
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.63% Alkaloid pathway 20.85% Phenylpropanoid pathway 20.67% Flavonoid pathway 12.33% Rosmarinic acid pathway 7.71% Steroid pathway 5.82%
Family Distribution
BAHD 7.37% C4H 6.07% C3'H/CYP98A 5.38% POD 4.16% CYP76 4.08% UGT 3.91% 4CL 3.63% F3H 3.43%
Other Families 61.96%
More Families (98)
7DLGT 281 3.37% UFGT 267 3.2% IFS 260 3.12% NMT 230 2.76% T3O 212 2.54% DWF4/CYP90B1 179 2.15% CODM/T6ODM 177 2.12% BR6OX2/CYP85A2 164 1.97% F3'H/CYP75B 161 1.93% H6H 148 1.77% STR 135 1.62% SMT1/SMT2/SMT3 126 1.51% TRI/TRII 121 1.45% CSE 119 1.43% CYP71 105 1.26% T16H 96 1.15% G8O/G8H 90 1.08% PYKS 88 1.06% SGD 87 1.04% BBE 84 1.01% FNS 82 0.98% IFR 81 0.97% CAD 76 0.91% CAS 72 0.86% LAC 70 0.84% TPS 70 0.84% F5H/CYP84A 63 0.76% GES 62 0.74% TAT 60 0.72% HCT 58 0.7% IO 57 0.68% SLS 56 0.67% ANR 55 0.66% F3'5'H/CYP75A 54 0.65% COMT 54 0.65% LAMT 53 0.64% PAL 51 0.61% RAS 50 0.6% CYP90D1 49 0.59% CCR 45 0.54% GS 43 0.52% CPD/CYP90A1 42 0.5% GGPPS 34 0.41% CPR 33 0.4% ANS/LDOX 32 0.38% 8HGO 29 0.35% BR6OX1/CYP85A1 29 0.35% FPPS 28 0.34% 7DLH 25 0.3% CYP51G1 25 0.3% 16OMT 24 0.29% NCS 23 0.28% PMT 23 0.28% CHS 23 0.28% COR 22 0.26% SQE 20 0.24% CNMT 18 0.22% CYP80B1 17 0.2% CCoAOMT 16 0.19% SQS/FDFT1 16 0.19% XMT_MXMT_DXMT 15 0.18% AACT 15 0.18% MVD 14 0.17% CYP719 13 0.16% CYP80F1 13 0.16% HPPR 13 0.16% SMO1/SMO2 13 0.16% MVK 13 0.16% ISY 12 0.14% MPO 12 0.14% TDC 12 0.14% ADC 11 0.13% FLS 11 0.13% DFR 11 0.13% ROT3/CYP90C1 11 0.13% CHI 10 0.12% DWF7 10 0.12% IDI 8 0.1% PMK 8 0.1% DXS 7 0.08% HYD1 6 0.07% MCT/IspD 6 0.07% TYDC_DDC 5 0.06% CPI1 5 0.06% DET2 5 0.06% DWF5 5 0.06% DWF1 5 0.06% HDR/IspH 5 0.06% MDS/IspF 4 0.05% 6OMT_4OMT_SOMT 3 0.04% HDS/IspG 3 0.04% DXR 3 0.04% HMGS 3 0.04% FK 2 0.02% HMGR 2 0.02% ODC 1 0.01% CMK/IspE 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1088 19 BAHD (493) View species results
Alkaloid pathway 695 23 NMT (133) View species results
Phenylpropanoid pathway 689 11 POD (300) View species results
Flavonoid pathway 411 14 UFGT (250) View species results
Rosmarinic acid pathway 257 7 C4H (88) View species results
Steroid pathway 194 12 SMT1/SMT2/SMT3 (76) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 723 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status
BjunContig501_1525585_17300010036830 Flavonoid F3'H/CYP75B medium borderline
BjunContig50520038400 Flavonoid F3'H/CYP75B medium borderline
BjunContig5330039350 Flavonoid F3'H/CYP75B medium borderline
BjunContig5330039500 Flavonoid F3'H/CYP75B low borderline
BjunContig5330039510 Flavonoid F3'H/CYP75B low borderline
BjunContig668_1_4839870044250 Flavonoid F3'H/CYP75B medium borderline
BjunContig7050045070 Flavonoid F3'H/CYP75B medium borderline
BjunContig8310049470 Flavonoid F3'H/CYP75B medium borderline
BjunSuper_scaffold_5_1_6334723_245229_7451470068440 Flavonoid F3'H/CYP75B medium borderline
BjunSuper_scaffold_5_1_6334723_745148_63347230068620 Flavonoid F3'H/CYP75B medium borderline
BjunSuper_scaffold_5_1_6334723_745148_63347230068640 Flavonoid F3'H/CYP75B medium borderline