Brassica juncea (brassica_juncea)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 32.63% Alkaloid pathway 20.85% Phenylpropanoid pathway 20.67% Flavonoid pathway 12.33% Rosmarinic acid pathway 7.71% Steroid pathway 5.82%

Family Distribution

3334 Candidate Genes

BAHD 7.37% C4H 6.07% C3'H/CYP98A 5.38% POD 4.16% CYP76 4.08% UGT 3.91% 4CL 3.63% F3H 3.43%

Other Families 61.96%

More Families (98)

7DLGT 281 3.37% UFGT 267 3.2% IFS 260 3.12% NMT 230 2.76% T3O 212 2.54% DWF4/CYP90B1 179 2.15% CODM/T6ODM 177 2.12% BR6OX2/CYP85A2 164 1.97% F3'H/CYP75B 161 1.93% H6H 148 1.77% STR 135 1.62% SMT1/SMT2/SMT3 126 1.51% TRI/TRII 121 1.45% CSE 119 1.43% CYP71 105 1.26% T16H 96 1.15% G8O/G8H 90 1.08% PYKS 88 1.06% SGD 87 1.04% BBE 84 1.01% FNS 82 0.98% IFR 81 0.97% CAD 76 0.91% CAS 72 0.86% LAC 70 0.84% TPS 70 0.84% F5H/CYP84A 63 0.76% GES 62 0.74% TAT 60 0.72% HCT 58 0.7% IO 57 0.68% SLS 56 0.67% ANR 55 0.66% F3'5'H/CYP75A 54 0.65% COMT 54 0.65% LAMT 53 0.64% PAL 51 0.61% RAS 50 0.6% CYP90D1 49 0.59% CCR 45 0.54% GS 43 0.52% CPD/CYP90A1 42 0.5% GGPPS 34 0.41% CPR 33 0.4% ANS/LDOX 32 0.38% 8HGO 29 0.35% BR6OX1/CYP85A1 29 0.35% FPPS 28 0.34% 7DLH 25 0.3% CYP51G1 25 0.3% 16OMT 24 0.29% NCS 23 0.28% PMT 23 0.28% CHS 23 0.28% COR 22 0.26% SQE 20 0.24% CNMT 18 0.22% CYP80B1 17 0.2% CCoAOMT 16 0.19% SQS/FDFT1 16 0.19% XMT_MXMT_DXMT 15 0.18% AACT 15 0.18% MVD 14 0.17% CYP719 13 0.16% CYP80F1 13 0.16% HPPR 13 0.16% SMO1/SMO2 13 0.16% MVK 13 0.16% ISY 12 0.14% MPO 12 0.14% TDC 12 0.14% ADC 11 0.13% FLS 11 0.13% DFR 11 0.13% ROT3/CYP90C1 11 0.13% CHI 10 0.12% DWF7 10 0.12% IDI 8 0.1% PMK 8 0.1% DXS 7 0.08% HYD1 6 0.07% MCT/IspD 6 0.07% TYDC_DDC 5 0.06% CPI1 5 0.06% DET2 5 0.06% DWF5 5 0.06% DWF1 5 0.06% HDR/IspH 5 0.06% MDS/IspF 4 0.05% 6OMT_4OMT_SOMT 3 0.04% HDS/IspG 3 0.04% DXR 3 0.04% HMGS 3 0.04% FK 2 0.02% HMGR 2 0.02% ODC 1 0.01% CMK/IspE 1 0.01% GPPS 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	1088	19	BAHD (493)	View species results
Alkaloid pathway	695	23	NMT (133)	View species results
Phenylpropanoid pathway	689	11	POD (300)	View species results
Flavonoid pathway	411	14	UFGT (250)	View species results
Rosmarinic acid pathway	257	7	C4H (88)	View species results
Steroid pathway	194	12	SMT1/SMT2/SMT3 (76)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	3016	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	723	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
BjunB07G0010310	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
BjunB07G0019420	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
BjunB07G0022830	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
BjunB07G0025750	Alkaloid	NMT	low	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
BjunB07G0029230	Alkaloid	NMT	low	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
BjunB08G0004330	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
BjunB08G0004460	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
BjunB08G0040190	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
BjunContig11200001830	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
BjunContig118_1274036_2398663_991547_10511170002920	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
BjunContig16620011470	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
BjunContig16620011480	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
BjunContig16800012210	Alkaloid	NMT	low	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
BjunContig19920015060	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
BjunContig22710017610	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
BjunContig37070028550	Alkaloid	NMT	medium	borderline	NMT__00051__sp_Q96565_AMNMT_HORVV
BjunContig377_149656_1596215_862557_14465600030290	Alkaloid	NMT	medium	pass	NMT__00022__sp_O65312_MEDEA_ARATH
BjunContig45_441190_1350896_91035_1261000034950	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
BjunContig78830048660	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
BjunSuper_scaffold_109_1_1694999_1_1273100054160	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
BjunSuper_scaffold_109_3169392_4351964_52914_5676090054870	Alkaloid	NMT	medium	pass	NMT__00024__sp_P0CB22_ATX2_ARATH
BjunSuper_scaffold_113_433503_4721180055220	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
BjunSuper_scaffold_116_1_882720055290	Alkaloid	NMT	medium	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
BjunSuper_scaffold_184_753382_15810110061260	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
BjunSuper_scaffold_30_15921_14869130064520	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
BjunSuper_scaffold_40_756397_14457000066190	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
BjunSuper_scaffold_48_1_28833410066690	Alkaloid	NMT	low	borderline	NMT__00039__sp_Q84W92_ANM13_ARATH
BjunSuper_scaffold_5_1_6334723_245229_7451470068320	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
BjunSuper_scaffold_730070410	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
BjunSuper_scaffold_820073860	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH