Brassica juncea (brassica_juncea)
Imported from atlas release summary for Brassica juncea.
3334
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3334
Candidate Genes
BAHD
7.37%
C4H
6.07%
C3'H/CYP98A
5.38%
POD
4.16%
CYP76
4.08%
UGT
3.91%
4CL
3.63%
F3H
3.43%
Other Families
61.96%
More Families (98)
7DLGT
281
3.37%
UFGT
267
3.2%
IFS
260
3.12%
NMT
230
2.76%
T3O
212
2.54%
DWF4/CYP90B1
179
2.15%
CODM/T6ODM
177
2.12%
BR6OX2/CYP85A2
164
1.97%
F3'H/CYP75B
161
1.93%
H6H
148
1.77%
STR
135
1.62%
SMT1/SMT2/SMT3
126
1.51%
TRI/TRII
121
1.45%
CSE
119
1.43%
CYP71
105
1.26%
T16H
96
1.15%
G8O/G8H
90
1.08%
PYKS
88
1.06%
SGD
87
1.04%
BBE
84
1.01%
FNS
82
0.98%
IFR
81
0.97%
CAD
76
0.91%
CAS
72
0.86%
LAC
70
0.84%
TPS
70
0.84%
F5H/CYP84A
63
0.76%
GES
62
0.74%
TAT
60
0.72%
HCT
58
0.7%
IO
57
0.68%
SLS
56
0.67%
ANR
55
0.66%
F3'5'H/CYP75A
54
0.65%
COMT
54
0.65%
LAMT
53
0.64%
PAL
51
0.61%
RAS
50
0.6%
CYP90D1
49
0.59%
CCR
45
0.54%
GS
43
0.52%
CPD/CYP90A1
42
0.5%
GGPPS
34
0.41%
CPR
33
0.4%
ANS/LDOX
32
0.38%
8HGO
29
0.35%
BR6OX1/CYP85A1
29
0.35%
FPPS
28
0.34%
7DLH
25
0.3%
CYP51G1
25
0.3%
16OMT
24
0.29%
NCS
23
0.28%
PMT
23
0.28%
CHS
23
0.28%
COR
22
0.26%
SQE
20
0.24%
CNMT
18
0.22%
CYP80B1
17
0.2%
CCoAOMT
16
0.19%
SQS/FDFT1
16
0.19%
XMT_MXMT_DXMT
15
0.18%
AACT
15
0.18%
MVD
14
0.17%
CYP719
13
0.16%
CYP80F1
13
0.16%
HPPR
13
0.16%
SMO1/SMO2
13
0.16%
MVK
13
0.16%
ISY
12
0.14%
MPO
12
0.14%
TDC
12
0.14%
ADC
11
0.13%
FLS
11
0.13%
DFR
11
0.13%
ROT3/CYP90C1
11
0.13%
CHI
10
0.12%
DWF7
10
0.12%
IDI
8
0.1%
PMK
8
0.1%
DXS
7
0.08%
HYD1
6
0.07%
MCT/IspD
6
0.07%
TYDC_DDC
5
0.06%
CPI1
5
0.06%
DET2
5
0.06%
DWF5
5
0.06%
DWF1
5
0.06%
HDR/IspH
5
0.06%
MDS/IspF
4
0.05%
6OMT_4OMT_SOMT
3
0.04%
HDS/IspG
3
0.04%
DXR
3
0.04%
HMGS
3
0.04%
FK
2
0.02%
HMGR
2
0.02%
ODC
1
0.01%
CMK/IspE
1
0.01%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1088 | 19 | BAHD (493) | View species results |
| Alkaloid pathway | 695 | 23 | NMT (133) | View species results |
| Phenylpropanoid pathway | 689 | 11 | POD (300) | View species results |
| Flavonoid pathway | 411 | 14 | UFGT (250) | View species results |
| Rosmarinic acid pathway | 257 | 7 | C4H (88) | View species results |
| Steroid pathway | 194 | 12 | SMT1/SMT2/SMT3 (76) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3016 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 723 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| BjunB06G0030140 | Alkaloid | STR | medium | pass |
| BjunB06G0030790 | Alkaloid | STR | low | borderline |
| BjunB06G0034810 | Alkaloid | STR | medium | pass |
| BjunB06G0035290 | Alkaloid | STR | medium | pass |
| BjunB06G0035300 | Alkaloid | STR | medium | pass |
| BjunB06G0035670 | Alkaloid | STR | medium | pass |
| BjunB06G0036380 | Alkaloid | STR | medium | pass |
| BjunB06G0036400 | Alkaloid | STR | medium | pass |
| BjunB06G0036410 | Alkaloid | STR | medium | pass |
| BjunB06G0036420 | Alkaloid | STR | medium | pass |
| BjunB06G0037680 | Alkaloid | STR | low | borderline |
| BjunB07G0006070 | Alkaloid | STR | low | borderline |
| BjunB07G0029550 | Alkaloid | STR | low | borderline |
| BjunB08G0008710 | Alkaloid | STR | low | borderline |
| BjunB08G0022460 | Alkaloid | STR | medium | pass |
| BjunB08G0022470 | Alkaloid | STR | medium | pass |
| BjunB08G0022690 | Alkaloid | STR | low | borderline |
| BjunB08G0042850 | Alkaloid | STR | low | borderline |
| BjunB08G0045070 | Alkaloid | STR | medium | pass |
| BjunB08G0045080 | Alkaloid | STR | medium | pass |
| BjunB08G0047080 | Alkaloid | STR | medium | pass |
| BjunContig1246_1_1837640005440 | Alkaloid | STR | medium | pass |
| BjunContig27210021350 | Alkaloid | STR | medium | pass |
| BjunContig27210021360 | Alkaloid | STR | medium | pass |
| BjunContig279_2022665_2465082_1_2295950021700 | Alkaloid | STR | medium | pass |
| BjunContig35320027190 | Alkaloid | STR | low | borderline |
| BjunContig3720_1_1448070029150 | Alkaloid | STR | low | borderline |
| BjunContig377_149656_1596215_862557_14465600030130 | Alkaloid | STR | medium | pass |
| BjunContig501_1_1525584_15001_10356590037530 | Alkaloid | STR | low | borderline |
| BjunContig52210038780 | Alkaloid | STR | medium | pass |
| BjunContig5500040860 | Alkaloid | STR | low | borderline |
| BjunContig71_869334_18815850045760 | Alkaloid | STR | low | borderline |
| BjunSuper_scaffold_120_799307_8353420056020 | Alkaloid | STR | medium | pass |
| BjunSuper_scaffold_730070730 | Alkaloid | STR | medium | pass |
| BjunSuper_scaffold_81_2057850_5961509_1_38687840073420 | Alkaloid | STR | low | borderline |