Brassica juncea (brassica_juncea)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 32.63% Alkaloid pathway 20.85% Phenylpropanoid pathway 20.67% Flavonoid pathway 12.33% Rosmarinic acid pathway 7.71% Steroid pathway 5.82%

Family Distribution

3334 Candidate Genes

BAHD 7.37% C4H 6.07% C3'H/CYP98A 5.38% POD 4.16% CYP76 4.08% UGT 3.91% 4CL 3.63% F3H 3.43%

Other Families 61.96%

More Families (98)

7DLGT 281 3.37% UFGT 267 3.2% IFS 260 3.12% NMT 230 2.76% T3O 212 2.54% DWF4/CYP90B1 179 2.15% CODM/T6ODM 177 2.12% BR6OX2/CYP85A2 164 1.97% F3'H/CYP75B 161 1.93% H6H 148 1.77% STR 135 1.62% SMT1/SMT2/SMT3 126 1.51% TRI/TRII 121 1.45% CSE 119 1.43% CYP71 105 1.26% T16H 96 1.15% G8O/G8H 90 1.08% PYKS 88 1.06% SGD 87 1.04% BBE 84 1.01% FNS 82 0.98% IFR 81 0.97% CAD 76 0.91% CAS 72 0.86% LAC 70 0.84% TPS 70 0.84% F5H/CYP84A 63 0.76% GES 62 0.74% TAT 60 0.72% HCT 58 0.7% IO 57 0.68% SLS 56 0.67% ANR 55 0.66% F3'5'H/CYP75A 54 0.65% COMT 54 0.65% LAMT 53 0.64% PAL 51 0.61% RAS 50 0.6% CYP90D1 49 0.59% CCR 45 0.54% GS 43 0.52% CPD/CYP90A1 42 0.5% GGPPS 34 0.41% CPR 33 0.4% ANS/LDOX 32 0.38% 8HGO 29 0.35% BR6OX1/CYP85A1 29 0.35% FPPS 28 0.34% 7DLH 25 0.3% CYP51G1 25 0.3% 16OMT 24 0.29% NCS 23 0.28% PMT 23 0.28% CHS 23 0.28% COR 22 0.26% SQE 20 0.24% CNMT 18 0.22% CYP80B1 17 0.2% CCoAOMT 16 0.19% SQS/FDFT1 16 0.19% XMT_MXMT_DXMT 15 0.18% AACT 15 0.18% MVD 14 0.17% CYP719 13 0.16% CYP80F1 13 0.16% HPPR 13 0.16% SMO1/SMO2 13 0.16% MVK 13 0.16% ISY 12 0.14% MPO 12 0.14% TDC 12 0.14% ADC 11 0.13% FLS 11 0.13% DFR 11 0.13% ROT3/CYP90C1 11 0.13% CHI 10 0.12% DWF7 10 0.12% IDI 8 0.1% PMK 8 0.1% DXS 7 0.08% HYD1 6 0.07% MCT/IspD 6 0.07% TYDC_DDC 5 0.06% CPI1 5 0.06% DET2 5 0.06% DWF5 5 0.06% DWF1 5 0.06% HDR/IspH 5 0.06% MDS/IspF 4 0.05% 6OMT_4OMT_SOMT 3 0.04% HDS/IspG 3 0.04% DXR 3 0.04% HMGS 3 0.04% FK 2 0.02% HMGR 2 0.02% ODC 1 0.01% CMK/IspE 1 0.01% GPPS 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	1088	19	BAHD (493)	View species results
Alkaloid pathway	695	23	NMT (133)	View species results
Phenylpropanoid pathway	689	11	POD (300)	View species results
Flavonoid pathway	411	14	UFGT (250)	View species results
Rosmarinic acid pathway	257	7	C4H (88)	View species results
Steroid pathway	194	12	SMT1/SMT2/SMT3 (76)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	3016	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	723	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: TRI/TRII

Gene	Pathway	Family	Confidence	Status	Best Target
BjunB07G0010440	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
BjunB07G0019290	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
BjunB07G0023020	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
BjunB08G0002830	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00005__sp_P50162_TRN1_DATST
BjunB08G0026930	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
BjunB08G0031800	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
BjunB08G0032480	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
BjunB08G0039480	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
BjunB08G0041350	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
BjunContig106620001160	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
BjunContig118_1274036_2398663_875207_991546_26974_1163400002750	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00005__sp_P50162_TRN1_DATST
BjunContig118_1274036_2398663_875207_991546_26974_1163400002770	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00005__sp_P50162_TRN1_DATST
BjunContig176_1863893_2424353_437358_5604610013330	Alkaloid	TRI/TRII	low	borderline	TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH
BjunContig32400025860	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
BjunContig5560041080	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
BjunContig73030047360	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
BjunContig90340051850	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00005__sp_P50162_TRN1_DATST
BjunSuper_scaffold_750071760	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
BjunSuper_scaffold_750071790	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
BjunSuper_scaffold_750071800	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
BjunSuper_scaffold_750071830	Alkaloid	TRI/TRII	medium	pass	TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH