Brassica juncea (brassica_juncea)
Imported from atlas release summary for Brassica juncea.
4298
Candidate Protein Records
3334
Pathway-Level Records
8339
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
8339
Family-Level Calls
BAHD
7.37%
C4H
6.07%
C3'H/CYP98A
5.38%
POD
4.16%
CYP76
4.08%
UGT
3.91%
4CL
3.63%
F3H
3.43%
Other Families
61.96%
More Families (98)
7DLGT
281
3.37%
UFGT
267
3.2%
IFS
260
3.12%
NMT
230
2.76%
T3O
212
2.54%
DWF4/CYP90B1
179
2.15%
CODM/T6ODM
177
2.12%
BR6OX2/CYP85A2
164
1.97%
F3'H/CYP75B
161
1.93%
H6H
148
1.77%
STR
135
1.62%
SMT1/SMT2/SMT3
126
1.51%
TRI/TRII
121
1.45%
CSE
119
1.43%
CYP71
105
1.26%
T16H
96
1.15%
G8O/G8H
90
1.08%
PYKS
88
1.06%
SGD
87
1.04%
BBE
84
1.01%
FNS
82
0.98%
IFR
81
0.97%
CAD
76
0.91%
CAS
72
0.86%
LAC
70
0.84%
TPS
70
0.84%
F5H/CYP84A
63
0.76%
GES
62
0.74%
TAT
60
0.72%
HCT
58
0.7%
IO
57
0.68%
SLS
56
0.67%
ANR
55
0.66%
F3'5'H/CYP75A
54
0.65%
COMT
54
0.65%
LAMT
53
0.64%
PAL
51
0.61%
RAS
50
0.6%
CYP90D1
49
0.59%
CCR
45
0.54%
GS
43
0.52%
CPD/CYP90A1
42
0.5%
GGPPS
34
0.41%
CPR
33
0.4%
ANS/LDOX
32
0.38%
8HGO
29
0.35%
BR6OX1/CYP85A1
29
0.35%
FPPS
28
0.34%
7DLH
25
0.3%
CYP51G1
25
0.3%
16OMT
24
0.29%
NCS
23
0.28%
PMT
23
0.28%
CHS
23
0.28%
COR
22
0.26%
SQE
20
0.24%
CNMT
18
0.22%
CYP80B1
17
0.2%
CCoAOMT
16
0.19%
SQS/FDFT1
16
0.19%
XMT_MXMT_DXMT
15
0.18%
AACT
15
0.18%
MVD
14
0.17%
CYP719
13
0.16%
CYP80F1
13
0.16%
HPPR
13
0.16%
SMO1/SMO2
13
0.16%
MVK
13
0.16%
ISY
12
0.14%
MPO
12
0.14%
TDC
12
0.14%
ADC
11
0.13%
FLS
11
0.13%
DFR
11
0.13%
ROT3/CYP90C1
11
0.13%
CHI
10
0.12%
DWF7
10
0.12%
IDI
8
0.1%
PMK
8
0.1%
DXS
7
0.08%
HYD1
6
0.07%
MCT/IspD
6
0.07%
TYDC_DDC
5
0.06%
CPI1
5
0.06%
DET2
5
0.06%
DWF5
5
0.06%
DWF1
5
0.06%
HDR/IspH
5
0.06%
MDS/IspF
4
0.05%
6OMT_4OMT_SOMT
3
0.04%
HDS/IspG
3
0.04%
DXR
3
0.04%
HMGS
3
0.04%
FK
2
0.02%
HMGR
2
0.02%
ODC
1
0.01%
CMK/IspE
1
0.01%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1088 | 19 | BAHD (493) | View species results |
| Alkaloid pathway | 695 | 23 | NMT (133) | View species results |
| Phenylpropanoid pathway | 689 | 11 | POD (300) | View species results |
| Flavonoid pathway | 411 | 14 | UFGT (250) | View species results |
| Rosmarinic acid pathway | 257 | 7 | C4H (88) | View species results |
| Steroid pathway | 194 | 12 | SMT1/SMT2/SMT3 (76) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3016 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 723 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| BjunB06G0018000 | Alkaloid | PYKS | low | borderline |
| BjunB06G0022800 | Alkaloid | PYKS | low | borderline |
| BjunB08G0004350 | Alkaloid | PYKS | high | pass |
| BjunB08G0021410 | Alkaloid | PYKS | medium | pass |
| BjunB08G0040030 | Alkaloid | PYKS | low | borderline |
| BjunContig47810035830 | Alkaloid | PYKS | low | borderline |
| BjunContig824_1_1173840049300 | Alkaloid | PYKS | low | borderline |
| BjunSuper_scaffold_120_122617_7993060055450 | Alkaloid | PYKS | low | borderline |
| BjunSuper_scaffold_199_1693331_32295160063050 | Alkaloid | PYKS | low | borderline |
| BjunA01G0024040 | Alkaloid | SGD | medium | pass |
| BjunA01G0024070 | Alkaloid | SGD | medium | pass |
| BjunA01G0026220 | Alkaloid | SGD | medium | pass |
| BjunA01G0028680 | Alkaloid | SGD | medium | pass |
| BjunA01G0028690 | Alkaloid | SGD | medium | pass |
| BjunA01G0034300 | Alkaloid | SGD | medium | pass |
| BjunA01G0035320 | Alkaloid | SGD | low | borderline |
| BjunA01G0036320 | Alkaloid | SGD | medium | pass |
| BjunA03G0043390 | Alkaloid | SGD | medium | pass |
| BjunA04G0000350 | Alkaloid | SGD | low | borderline |
| BjunA04G0000360 | Alkaloid | SGD | medium | pass |
| BjunA04G0008080 | Alkaloid | SGD | medium | pass |
| BjunA04G0008100 | Alkaloid | SGD | medium | pass |
| BjunA04G0024410 | Alkaloid | SGD | medium | pass |
| BjunA04G0024420 | Alkaloid | SGD | medium | pass |
| BjunA05G0003600 | Alkaloid | SGD | medium | pass |
| BjunA05G0003610 | Alkaloid | SGD | medium | pass |
| BjunA05G0004440 | Alkaloid | SGD | medium | pass |
| BjunA05G0004450 | Alkaloid | SGD | medium | pass |
| BjunA05G0004460 | Alkaloid | SGD | medium | pass |
| BjunA05G0004470 | Alkaloid | SGD | low | borderline |
| BjunA05G0004480 | Alkaloid | SGD | medium | pass |
| BjunA05G0004490 | Alkaloid | SGD | medium | pass |
| BjunA05G0004500 | Alkaloid | SGD | medium | pass |
| BjunA05G0010810 | Alkaloid | SGD | medium | pass |
| BjunA05G0010850 | Alkaloid | SGD | medium | pass |
| BjunA05G0010860 | Alkaloid | SGD | medium | pass |
| BjunA05G0014130 | Alkaloid | SGD | low | borderline |
| BjunA05G0015570 | Alkaloid | SGD | low | borderline |
| BjunA05G0028690 | Alkaloid | SGD | medium | pass |
| BjunA05G0030490 | Alkaloid | SGD | low | borderline |
| BjunA06G0010490 | Alkaloid | SGD | medium | pass |
| BjunA06G0018650 | Alkaloid | SGD | medium | pass |
| BjunA07G0018490 | Alkaloid | SGD | medium | pass |
| BjunA09G0015410 | Alkaloid | SGD | medium | pass |
| BjunA09G0030410 | Alkaloid | SGD | medium | pass |
| BjunA09G0039870 | Alkaloid | SGD | medium | pass |
| BjunA09G0039880 | Alkaloid | SGD | medium | pass |
| BjunA09G0039890 | Alkaloid | SGD | medium | pass |
| BjunA10G0000400 | Alkaloid | SGD | medium | pass |
| BjunA10G0002940 | Alkaloid | SGD | medium | pass |