PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
BnigB2G0017530.1 Flavonoid C4H medium borderline
BnigB2G0036380.1 Flavonoid C4H low borderline
BnigB2G0036400.1 Flavonoid C4H low borderline
BnigB3G0005530.1 Flavonoid C4H low borderline
BnigB3G0038570.1 Flavonoid C4H medium borderline
BnigB3G0038730.1 Flavonoid C4H medium borderline
BnigB3G0038740.1 Flavonoid C4H medium borderline
BnigB4G0037370.1 Flavonoid C4H medium borderline
BnigB5G0034200.1 Flavonoid C4H medium borderline
BnigB6G0024480.1 Flavonoid C4H low borderline
BnigB7G0015070.1 Flavonoid C4H medium borderline
BnigB8G0004830.1 Flavonoid C4H medium borderline
BnigB8G0051220.1 Flavonoid C4H low borderline
BnigB1G0002860.1 Rosmarinic Acid C4H medium pass
BnigB1G0003610.1 Rosmarinic Acid C4H low borderline
BnigB1G0008170.1 Rosmarinic Acid C4H low borderline
BnigB1G0010560.1 Rosmarinic Acid C4H low borderline
BnigB1G0010590.1 Rosmarinic Acid C4H low borderline
BnigB1G0010620.1 Rosmarinic Acid C4H low borderline
BnigB1G0015820.1 Rosmarinic Acid C4H medium pass
BnigB1G0015940.1 Rosmarinic Acid C4H low borderline
BnigB1G0015960.1 Rosmarinic Acid C4H low borderline
BnigB1G0015970.1 Rosmarinic Acid C4H low borderline
BnigB1G0015980.1 Rosmarinic Acid C4H low borderline
BnigB1G0016390.1 Rosmarinic Acid C4H low borderline
BnigB1G0016740.1 Rosmarinic Acid C4H low borderline
BnigB1G0018050.1 Rosmarinic Acid C4H low borderline
BnigB1G0021650.1 Rosmarinic Acid C4H low borderline
BnigB1G0024960.1 Rosmarinic Acid C4H low borderline
BnigB1G0027730.1 Rosmarinic Acid C4H medium pass
BnigB1G0028810.1 Rosmarinic Acid C4H medium pass
BnigB1G0030900.1 Rosmarinic Acid C4H low borderline
BnigB1G0030910.1 Rosmarinic Acid C4H low borderline
BnigB1G0030920.1 Rosmarinic Acid C4H low borderline
BnigB1G0030930.1 Rosmarinic Acid C4H low borderline
BnigB1G0032070.1 Rosmarinic Acid C4H low borderline
BnigB1G0035060.1 Rosmarinic Acid C4H low borderline
BnigB1G0040950.1 Rosmarinic Acid C4H low borderline
BnigB2G0001540.1 Rosmarinic Acid C4H low borderline
BnigB2G0003720.1 Rosmarinic Acid C4H medium pass
BnigB2G0003730.1 Rosmarinic Acid C4H low borderline
BnigB2G0014790.1 Rosmarinic Acid C4H low borderline
BnigB2G0014810.1 Rosmarinic Acid C4H low borderline
BnigB2G0015580.1 Rosmarinic Acid C4H low borderline
BnigB2G0017530.1 Rosmarinic Acid C4H low borderline
BnigB2G0018910.1 Rosmarinic Acid C4H low borderline
BnigB2G0022500.1 Rosmarinic Acid C4H medium pass
BnigB2G0028830.1 Rosmarinic Acid C4H low borderline
BnigB2G0029000.1 Rosmarinic Acid C4H low borderline
BnigB2G0029390.1 Rosmarinic Acid C4H medium pass