PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F5H/CYP84A
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Gene Pathway Family Confidence Status
BnigB1G0008790.1 Phenylpropanoid F5H/CYP84A low borderline
BnigB1G0015960.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB1G0015970.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB1G0015980.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB1G0027730.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB1G0030900.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB1G0030920.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB1G0030930.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB2G0003720.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB2G0014790.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB2G0035950.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB2G0036760.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB4G0021410.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB5G0014800.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB5G0014830.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB5G0014850.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB6G0000010.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB6G0016420.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB6G0032590.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB7G0010910.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0001510.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0003800.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0004510.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0016150.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0031630.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0031650.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0031700.1 Phenylpropanoid F5H/CYP84A medium borderline
BnigB8G0048470.1 Phenylpropanoid F5H/CYP84A medium borderline
Bnigscaffold_118.10009310.1 Phenylpropanoid F5H/CYP84A medium borderline
Bnigscaffold_201.10020920.1 Phenylpropanoid F5H/CYP84A medium borderline
Bnigscaffold_28.10027210.1 Phenylpropanoid F5H/CYP84A medium borderline
Bnigscaffold_44.20047460.1 Phenylpropanoid F5H/CYP84A medium borderline
Bnigscaffold_524.10051920.1 Phenylpropanoid F5H/CYP84A medium pass
Bnigscaffold_526.10052000.1 Phenylpropanoid F5H/CYP84A medium borderline
Bnigscaffold_82.10065010.1 Phenylpropanoid F5H/CYP84A medium borderline