PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
BnigB1G0002040.1 Phenylpropanoid CAD medium borderline
BnigB1G0006580.1 Phenylpropanoid CAD low borderline
BnigB1G0006620.1 Phenylpropanoid CAD low borderline
BnigB1G0023790.1 Phenylpropanoid CAD low borderline
BnigB1G0027530.1 Phenylpropanoid CAD medium borderline
BnigB1G0040490.1 Phenylpropanoid CAD low borderline
BnigB2G0037580.1 Phenylpropanoid CAD low borderline
BnigB2G0054380.1 Phenylpropanoid CAD medium pass
BnigB2G0054390.1 Phenylpropanoid CAD medium pass
BnigB2G0054520.1 Phenylpropanoid CAD medium pass
BnigB3G0024000.1 Phenylpropanoid CAD low borderline
BnigB4G0011730.1 Phenylpropanoid CAD low borderline
BnigB4G0048610.1 Phenylpropanoid CAD low borderline
BnigB5G0014170.1 Phenylpropanoid CAD medium pass
BnigB5G0031530.1 Phenylpropanoid CAD low borderline
BnigB5G0036560.1 Phenylpropanoid CAD low borderline
BnigB5G0047990.1 Phenylpropanoid CAD medium pass
BnigB5G0048000.1 Phenylpropanoid CAD medium pass
BnigB6G0005430.1 Phenylpropanoid CAD medium borderline
BnigB6G0014200.1 Phenylpropanoid CAD medium borderline
BnigB6G0014210.1 Phenylpropanoid CAD medium borderline
BnigB6G0014220.1 Phenylpropanoid CAD medium borderline
BnigB6G0014230.1 Phenylpropanoid CAD medium borderline
BnigB6G0014240.1 Phenylpropanoid CAD medium borderline
BnigB6G0025640.1 Phenylpropanoid CAD low borderline
BnigB6G0032600.1 Phenylpropanoid CAD low borderline
BnigB7G0007300.1 Phenylpropanoid CAD low borderline
BnigB7G0007650.1 Phenylpropanoid CAD low borderline
BnigB7G0012580.1 Phenylpropanoid CAD medium pass
BnigB7G0024580.1 Phenylpropanoid CAD low borderline
BnigB8G0007480.1 Phenylpropanoid CAD low borderline
BnigB8G0007570.1 Phenylpropanoid CAD medium pass
BnigB8G0020420.1 Phenylpropanoid CAD medium borderline
BnigB8G0035280.1 Phenylpropanoid CAD medium borderline
BnigB8G0038680.1 Phenylpropanoid CAD low borderline
BnigB8G0043670.1 Phenylpropanoid CAD low borderline
BnigB8G0050210.1 Phenylpropanoid CAD low borderline
BnigB8G0059310.1 Phenylpropanoid CAD medium pass
Bnigscaffold_10.10000270.1 Phenylpropanoid CAD medium pass
Bnigscaffold_10.10004020.1 Phenylpropanoid CAD medium borderline
Bnigscaffold_28.10028720.1 Phenylpropanoid CAD low borderline
Bnigscaffold_42.10044170.1 Phenylpropanoid CAD medium borderline
Bnigscaffold_434.10045650.1 Phenylpropanoid CAD medium borderline
Bnigscaffold_434.10045670.1 Phenylpropanoid CAD medium borderline
Bnigscaffold_44.10047160.1 Phenylpropanoid CAD low borderline
Bnigscaffold_44.10047200.1 Phenylpropanoid CAD low borderline
Bnigscaffold_4473.10047890.1 Phenylpropanoid CAD medium pass
Bnigscaffold_464.10048170.1 Phenylpropanoid CAD low borderline
Bnigscaffold_47.10049000.1 Phenylpropanoid CAD medium borderline
Bnigscaffold_75.10062760.1 Phenylpropanoid CAD low borderline