PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
Reset
Gene Pathway Family Confidence Status
BnigB1G0005420.1 Flavonoid F3H medium borderline
BnigB1G0005430.1 Flavonoid F3H medium borderline
BnigB1G0007090.1 Flavonoid F3H medium borderline
BnigB1G0008730.1 Flavonoid F3H low borderline
BnigB1G0011210.1 Flavonoid F3H medium borderline
BnigB1G0011680.1 Flavonoid F3H medium borderline
BnigB1G0023680.1 Flavonoid F3H medium borderline
BnigB1G0023690.1 Flavonoid F3H medium borderline
BnigB1G0023710.1 Flavonoid F3H medium borderline
BnigB1G0023720.1 Flavonoid F3H medium borderline
BnigB1G0023740.1 Flavonoid F3H medium borderline
BnigB1G0023760.1 Flavonoid F3H medium borderline
BnigB1G0027850.1 Flavonoid F3H medium pass
BnigB1G0030030.1 Flavonoid F3H medium borderline
BnigB1G0033940.1 Flavonoid F3H low borderline
BnigB1G0035740.1 Flavonoid F3H medium borderline
BnigB1G0036590.1 Flavonoid F3H medium borderline
BnigB2G0004670.1 Flavonoid F3H medium borderline
BnigB2G0013500.1 Flavonoid F3H low borderline
BnigB2G0014640.1 Flavonoid F3H low borderline
BnigB2G0016910.1 Flavonoid F3H medium borderline
BnigB2G0021460.1 Flavonoid F3H low borderline
BnigB2G0028980.1 Flavonoid F3H medium borderline
BnigB2G0029480.1 Flavonoid F3H medium borderline
BnigB2G0029610.1 Flavonoid F3H medium borderline
BnigB2G0032240.1 Flavonoid F3H medium borderline
BnigB2G0032820.1 Flavonoid F3H medium borderline
BnigB2G0037630.1 Flavonoid F3H low borderline
BnigB2G0041280.1 Flavonoid F3H medium borderline
BnigB2G0042710.1 Flavonoid F3H medium borderline
BnigB2G0044890.1 Flavonoid F3H medium borderline
BnigB2G0044950.1 Flavonoid F3H medium borderline
BnigB3G0002950.1 Flavonoid F3H medium borderline
BnigB3G0008310.1 Flavonoid F3H low borderline
BnigB3G0008640.1 Flavonoid F3H medium borderline
BnigB3G0009580.1 Flavonoid F3H low borderline
BnigB3G0010190.1 Flavonoid F3H low borderline
BnigB3G0010200.1 Flavonoid F3H low borderline
BnigB3G0014090.1 Flavonoid F3H medium borderline
BnigB3G0016510.1 Flavonoid F3H medium borderline
BnigB3G0020880.1 Flavonoid F3H low borderline
BnigB3G0020920.1 Flavonoid F3H low borderline
BnigB3G0024210.1 Flavonoid F3H medium borderline
BnigB3G0024240.1 Flavonoid F3H medium borderline
BnigB3G0034070.1 Flavonoid F3H medium borderline
BnigB3G0035180.1 Flavonoid F3H medium borderline
BnigB3G0044250.1 Flavonoid F3H medium borderline
BnigB3G0044260.1 Flavonoid F3H medium pass
BnigB3G0044280.1 Flavonoid F3H medium borderline
BnigB3G0044290.1 Flavonoid F3H medium borderline