PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
Reset
Gene Pathway Family Confidence Status
BnigB1G0017350.1 Terpenoid AACT medium borderline
BnigB3G0037020.1 Terpenoid AACT medium borderline
BnigB4G0002020.1 Terpenoid AACT medium borderline
BnigB5G0036360.1 Terpenoid AACT medium borderline
BnigB6G0028040.1 Terpenoid AACT medium borderline
BnigB6G0031050.1 Terpenoid AACT medium borderline
BnigB6G0034820.1 Terpenoid AACT medium borderline
BnigB7G0056900.1 Terpenoid AACT medium borderline
BnigB8G0046910.1 Terpenoid AACT medium borderline
Bnigscaffold_82.10064680.1 Terpenoid AACT low borderline
BnigB1G0001280.1 Terpenoid BAHD medium pass
BnigB1G0002140.1 Terpenoid BAHD medium pass
BnigB1G0002440.1 Terpenoid BAHD low borderline
BnigB1G0003530.1 Terpenoid BAHD medium pass
BnigB1G0003590.1 Terpenoid BAHD medium pass
BnigB1G0003650.1 Terpenoid BAHD medium pass
BnigB1G0005050.1 Terpenoid BAHD medium pass
BnigB1G0005060.1 Terpenoid BAHD medium pass
BnigB1G0005220.1 Terpenoid BAHD medium pass
BnigB1G0009680.1 Terpenoid BAHD low borderline
BnigB1G0010970.1 Terpenoid BAHD low borderline
BnigB1G0012090.1 Terpenoid BAHD low borderline
BnigB1G0012310.1 Terpenoid BAHD low borderline
BnigB1G0013000.1 Terpenoid BAHD medium pass
BnigB1G0014260.1 Terpenoid BAHD low borderline
BnigB1G0017670.1 Terpenoid BAHD medium pass
BnigB1G0017680.1 Terpenoid BAHD medium pass
BnigB1G0017710.1 Terpenoid BAHD medium pass
BnigB1G0018590.1 Terpenoid BAHD medium pass
BnigB1G0020340.1 Terpenoid BAHD medium pass
BnigB1G0022030.1 Terpenoid BAHD medium pass
BnigB1G0022190.1 Terpenoid BAHD low borderline
BnigB1G0025010.1 Terpenoid BAHD medium pass
BnigB1G0028410.1 Terpenoid BAHD low borderline
BnigB1G0029650.1 Terpenoid BAHD medium pass
BnigB1G0031650.1 Terpenoid BAHD medium pass
BnigB1G0032080.1 Terpenoid BAHD medium pass
BnigB1G0032900.1 Terpenoid BAHD low borderline
BnigB1G0035870.1 Terpenoid BAHD medium pass
BnigB1G0036100.1 Terpenoid BAHD medium pass
BnigB1G0036110.1 Terpenoid BAHD medium pass
BnigB1G0036500.1 Terpenoid BAHD medium pass
BnigB1G0037930.1 Terpenoid BAHD low borderline
BnigB1G0039150.1 Terpenoid BAHD medium pass
BnigB1G0039240.1 Terpenoid BAHD medium pass
BnigB1G0039250.1 Terpenoid BAHD medium pass
BnigB2G0001190.1 Terpenoid BAHD medium pass
BnigB2G0002280.1 Terpenoid BAHD medium pass
BnigB2G0002310.1 Terpenoid BAHD medium pass
BnigB2G0005720.1 Terpenoid BAHD medium pass