PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status
BnigB2G0028390.1 Flavonoid PAL high pass
BnigB2G0028400.1 Flavonoid PAL medium pass
BnigB2G0050150.1 Flavonoid PAL medium pass
BnigB3G0005560.1 Flavonoid PAL high pass
BnigB3G0034870.1 Flavonoid PAL medium pass
BnigB3G0034880.1 Flavonoid PAL high pass
BnigB3G0034910.1 Flavonoid PAL medium pass
BnigB3G0034920.1 Flavonoid PAL medium pass
BnigB4G0007690.1 Flavonoid PAL medium pass
BnigB4G0007700.1 Flavonoid PAL high pass
BnigB4G0038920.1 Flavonoid PAL high pass
BnigB4G0047090.1 Flavonoid PAL high pass
BnigB5G0005440.1 Flavonoid PAL high pass
BnigB5G0041710.1 Flavonoid PAL high pass
Bnigscaffold_67.10059990.1 Flavonoid PAL low borderline
BnigB2G0028390.1 Phenylpropanoid PAL high pass
BnigB2G0028400.1 Phenylpropanoid PAL medium pass
BnigB2G0050150.1 Phenylpropanoid PAL medium pass
BnigB3G0005560.1 Phenylpropanoid PAL high pass
BnigB3G0034870.1 Phenylpropanoid PAL medium pass
BnigB3G0034880.1 Phenylpropanoid PAL high pass
BnigB3G0034910.1 Phenylpropanoid PAL medium pass
BnigB3G0034920.1 Phenylpropanoid PAL medium pass
BnigB4G0007690.1 Phenylpropanoid PAL medium pass
BnigB4G0007700.1 Phenylpropanoid PAL high pass
BnigB4G0038920.1 Phenylpropanoid PAL high pass
BnigB4G0047090.1 Phenylpropanoid PAL high pass
BnigB5G0005440.1 Phenylpropanoid PAL high pass
BnigB5G0041710.1 Phenylpropanoid PAL high pass
Bnigscaffold_67.10059990.1 Phenylpropanoid PAL low borderline
BnigB2G0028390.1 Rosmarinic Acid PAL high pass
BnigB2G0028400.1 Rosmarinic Acid PAL medium pass
BnigB2G0050150.1 Rosmarinic Acid PAL medium pass
BnigB3G0005560.1 Rosmarinic Acid PAL high pass
BnigB3G0034870.1 Rosmarinic Acid PAL medium pass
BnigB3G0034880.1 Rosmarinic Acid PAL high pass
BnigB3G0034910.1 Rosmarinic Acid PAL medium pass
BnigB3G0034920.1 Rosmarinic Acid PAL medium pass
BnigB4G0007690.1 Rosmarinic Acid PAL medium pass
BnigB4G0007700.1 Rosmarinic Acid PAL high pass
BnigB4G0038920.1 Rosmarinic Acid PAL high pass
BnigB4G0047090.1 Rosmarinic Acid PAL high pass
BnigB5G0005440.1 Rosmarinic Acid PAL high pass
BnigB5G0041710.1 Rosmarinic Acid PAL high pass
Bnigscaffold_67.10059990.1 Rosmarinic Acid PAL low borderline