PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
BnigB2G0011480.1 Alkaloid PMT medium pass
BnigB2G0020250.1 Alkaloid PMT low borderline
BnigB2G0025720.1 Alkaloid PMT medium borderline
BnigB3G0018520.1 Alkaloid PMT low borderline
BnigB3G0020310.1 Alkaloid PMT medium pass
BnigB3G0030670.1 Alkaloid PMT low borderline
BnigB3G0032720.1 Alkaloid PMT low borderline
BnigB3G0040350.1 Alkaloid PMT low borderline
BnigB4G0011700.1 Alkaloid PMT low borderline
BnigB7G0002790.1 Alkaloid PMT low borderline
BnigB7G0007240.1 Alkaloid PMT medium borderline
BnigB7G0030150.1 Alkaloid PMT medium borderline
BnigB7G0042530.1 Alkaloid PMT medium borderline
BnigB8G0013550.1 Alkaloid PMT low borderline
BnigB8G0020330.1 Alkaloid PMT medium pass
Bnigscaffold_12.10011210.1 Alkaloid PMT medium borderline
Bnigscaffold_295.10030810.1 Alkaloid PMT low borderline
Bnigscaffold_67.10060060.1 Alkaloid PMT low borderline