PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
Reset
Gene Pathway Family Confidence Status
BnigB1G0002860.1 Alkaloid IO medium borderline
BnigB1G0008170.1 Alkaloid IO medium borderline
BnigB1G0015980.1 Alkaloid IO medium borderline
BnigB1G0040950.1 Alkaloid IO medium borderline
BnigB2G0014810.1 Alkaloid IO medium pass
BnigB2G0028830.1 Alkaloid IO medium pass
BnigB2G0029400.1 Alkaloid IO medium borderline
BnigB2G0042560.1 Alkaloid IO medium borderline
BnigB2G0055510.1 Alkaloid IO medium borderline
BnigB2G0055540.1 Alkaloid IO medium borderline
BnigB2G0055960.1 Alkaloid IO medium pass
BnigB3G0000320.1 Alkaloid IO medium borderline
BnigB3G0022170.1 Alkaloid IO medium borderline
BnigB3G0022210.1 Alkaloid IO medium borderline
BnigB3G0026060.1 Alkaloid IO medium borderline
BnigB3G0029230.1 Alkaloid IO low borderline
BnigB4G0014220.1 Alkaloid IO medium borderline
BnigB4G0018290.1 Alkaloid IO medium borderline
BnigB4G0018490.1 Alkaloid IO medium borderline
BnigB4G0021410.1 Alkaloid IO medium borderline
BnigB4G0042270.1 Alkaloid IO medium borderline
BnigB5G0005660.1 Alkaloid IO medium borderline
BnigB5G0027470.1 Alkaloid IO medium pass
BnigB5G0048280.1 Alkaloid IO medium borderline
BnigB7G0025880.1 Alkaloid IO medium borderline
BnigB7G0025930.1 Alkaloid IO high pass
BnigB7G0032180.1 Alkaloid IO low borderline
BnigB7G0040580.1 Alkaloid IO medium borderline
BnigB7G0046460.1 Alkaloid IO medium pass
BnigB7G0051130.1 Alkaloid IO medium pass
BnigB8G0028270.1 Alkaloid IO medium borderline
BnigB8G0031630.1 Alkaloid IO medium borderline
BnigB8G0031650.1 Alkaloid IO medium borderline
BnigB8G0031700.1 Alkaloid IO high pass
BnigB8G0056910.1 Alkaloid IO medium borderline
BnigB8G0058650.1 Alkaloid IO medium borderline
BnigB8G0059050.1 Alkaloid IO medium pass
Bnigscaffold_208.10021900.1 Alkaloid IO low borderline
Bnigscaffold_28.10027220.1 Alkaloid IO medium borderline
Bnigscaffold_28.10028030.1 Alkaloid IO low borderline
Bnigscaffold_312.10035160.1 Alkaloid IO medium borderline