PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.38% Phenylpropanoid pathway 20.95% Alkaloid pathway 20.02% Flavonoid pathway 12.73% Rosmarinic acid pathway 8.81% Steroid pathway 6.12%
Family Distribution
BAHD 6.93% C4H 6.56% C3'H/CYP98A 6.0% CYP76 4.07% POD 3.95% IFS 3.76% UGT 3.66% T3O 3.62%
Other Families 61.44%
More Families (97)
UFGT 172 3.33% 4CL 171 3.31% 7DLGT 168 3.25% F3H 156 3.02% DWF4/CYP90B1 136 2.63% NMT 123 2.38% F3'H/CYP75B 99 1.92% CODM/T6ODM 96 1.86% BR6OX2/CYP85A2 96 1.86% STR 87 1.68% CYP71 84 1.63% H6H 79 1.53% SMT1/SMT2/SMT3 79 1.53% TRI/TRII 71 1.37% CSE 60 1.16% T16H 51 0.99% CAD 51 0.99% SGD 49 0.95% IFR 49 0.95% BBE 47 0.91% PYKS 46 0.89% PAL 45 0.87% COMT 44 0.85% LAC 42 0.81% CYP90D1 42 0.81% IO 41 0.79% CAS 41 0.79% TPS 39 0.76% GES 37 0.72% LAMT 36 0.7% F3'5'H/CYP75A 36 0.7% F5H/CYP84A 35 0.68% TAT 35 0.68% RAS 35 0.68% ANR 33 0.64% G8O/G8H 30 0.58% 16OMT 30 0.58% HCT 30 0.58% FNS 28 0.54% CCR 26 0.5% CPD/CYP90A1 25 0.48% 7DLH 24 0.46% SLS 23 0.45% GS 23 0.45% ANS/LDOX 21 0.41% 8HGO 20 0.39% BR6OX1/CYP85A1 20 0.39% GGPPS 20 0.39% CPR 19 0.37% PMT 18 0.35% CYP51G1 18 0.35% COR 15 0.29% FPPS 15 0.29% NCS 13 0.25% CCoAOMT 12 0.23% SQS/FDFT1 12 0.23% SQE 11 0.21% ADC 10 0.19% CHS 10 0.19% DFR 10 0.19% AACT 10 0.19% CNMT 9 0.17% CYP80B1 9 0.17% ROT3/CYP90C1 9 0.17% MPO 8 0.15% TYDC_DDC 8 0.15% DWF7 8 0.15% SMO1/SMO2 8 0.15% MVD 8 0.15% CYP719 7 0.14% ISY 7 0.14% HPPR 7 0.14% CHI 6 0.12% MVK 6 0.12% TDC 5 0.1% PMK 5 0.1% IDI 5 0.1% DXS 5 0.1% HMGR 5 0.1% DET2 4 0.08% HDR/IspH 4 0.08% MCT/IspD 4 0.08% XMT_MXMT_DXMT 3 0.06% FLS 3 0.06% DWF5 3 0.06% DWF1 3 0.06% CPI1 3 0.06% FK 3 0.06% HYD1 3 0.06% DXR 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% ODC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% CYP80F1 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80B1
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Gene Pathway Family Confidence Status Best Target
BnigB3G0027440.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
BnigB3G0054400.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
BnigB4G0009370.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
BnigB4G0039760.1 Alkaloid CYP80B1 medium borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
BnigB5G0014830.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
BnigB5G0045530.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
BnigB6G0032880.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
BnigB8G0055330.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
Bnigscaffold_42.10043640.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA