PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
BnigB1G0015960.1 Alkaloid G8O/G8H medium borderline
BnigB1G0016740.1 Alkaloid G8O/G8H medium borderline
BnigB1G0018050.1 Alkaloid G8O/G8H medium borderline
BnigB1G0024960.1 Alkaloid G8O/G8H medium borderline
BnigB2G0022500.1 Alkaloid G8O/G8H medium borderline
BnigB2G0048380.1 Alkaloid G8O/G8H medium borderline
BnigB3G0011900.1 Alkaloid G8O/G8H medium borderline
BnigB3G0017660.1 Alkaloid G8O/G8H medium borderline
BnigB3G0038570.1 Alkaloid G8O/G8H medium borderline
BnigB3G0042870.1 Alkaloid G8O/G8H medium borderline
BnigB4G0038150.1 Alkaloid G8O/G8H medium borderline
BnigB4G0043210.1 Alkaloid G8O/G8H medium borderline
BnigB5G0019370.1 Alkaloid G8O/G8H medium borderline
BnigB5G0032770.1 Alkaloid G8O/G8H medium borderline
BnigB6G0000010.1 Alkaloid G8O/G8H medium borderline
BnigB6G0024480.1 Alkaloid G8O/G8H medium borderline
BnigB6G0032800.1 Alkaloid G8O/G8H medium borderline
BnigB6G0033820.1 Alkaloid G8O/G8H medium borderline
BnigB6G0038520.1 Alkaloid G8O/G8H medium borderline
BnigB8G0001470.1 Alkaloid G8O/G8H low borderline
BnigB8G0004830.1 Alkaloid G8O/G8H medium borderline
BnigB8G0015880.1 Alkaloid G8O/G8H medium borderline
BnigB8G0016120.1 Alkaloid G8O/G8H medium borderline
BnigB8G0050910.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_201.10020920.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_247.10024890.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_28.10027210.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_47.10048790.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_586.10055430.1 Alkaloid G8O/G8H medium borderline
Bnigscaffold_678.10060620.1 Alkaloid G8O/G8H low borderline