PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2043
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
BnigB1G0015820.1 Alkaloid T3O medium borderline
BnigB1G0016390.1 Alkaloid T3O medium pass
BnigB1G0017630.1 Alkaloid T3O medium pass
BnigB1G0021650.1 Alkaloid T3O medium borderline
BnigB1G0023570.1 Alkaloid T3O low borderline
BnigB1G0027730.1 Alkaloid T3O medium borderline
BnigB1G0028810.1 Alkaloid T3O medium borderline
BnigB1G0030900.1 Alkaloid T3O medium borderline
BnigB1G0035060.1 Alkaloid T3O medium pass
BnigB1G0039370.1 Alkaloid T3O low borderline
BnigB2G0003720.1 Alkaloid T3O medium borderline
BnigB2G0014790.1 Alkaloid T3O medium borderline
BnigB2G0028790.1 Alkaloid T3O low borderline
BnigB2G0029000.1 Alkaloid T3O medium pass
BnigB2G0033420.1 Alkaloid T3O low borderline
BnigB2G0035950.1 Alkaloid T3O medium borderline
BnigB2G0036370.1 Alkaloid T3O medium pass
BnigB2G0036380.1 Alkaloid T3O medium pass
BnigB2G0036400.1 Alkaloid T3O medium pass
BnigB2G0036760.1 Alkaloid T3O medium borderline
BnigB2G0040040.1 Alkaloid T3O medium borderline
BnigB2G0040050.1 Alkaloid T3O medium borderline
BnigB2G0040060.1 Alkaloid T3O medium pass
BnigB2G0040730.1 Alkaloid T3O medium borderline
BnigB2G0050250.1 Alkaloid T3O medium borderline
BnigB2G0053340.1 Alkaloid T3O medium borderline
BnigB2G0055480.1 Alkaloid T3O medium borderline
BnigB2G0055490.1 Alkaloid T3O medium borderline
BnigB2G0055520.1 Alkaloid T3O medium borderline
BnigB2G0055550.1 Alkaloid T3O medium borderline
BnigB2G0055560.1 Alkaloid T3O medium borderline
BnigB3G0005490.1 Alkaloid T3O medium borderline
BnigB3G0005500.1 Alkaloid T3O medium borderline
BnigB3G0005740.1 Alkaloid T3O low borderline
BnigB3G0010030.1 Alkaloid T3O medium borderline
BnigB3G0012200.1 Alkaloid T3O low borderline
BnigB3G0018430.1 Alkaloid T3O low borderline
BnigB3G0023240.1 Alkaloid T3O medium borderline
BnigB3G0023300.1 Alkaloid T3O medium borderline
BnigB3G0030250.1 Alkaloid T3O medium borderline
BnigB3G0037200.1 Alkaloid T3O medium borderline
BnigB3G0042880.1 Alkaloid T3O medium borderline
BnigB3G0043780.1 Alkaloid T3O low borderline
BnigB3G0053820.1 Alkaloid T3O medium pass
BnigB3G0054070.1 Alkaloid T3O low borderline
BnigB4G0001350.1 Alkaloid T3O medium pass
BnigB4G0002130.1 Alkaloid T3O low borderline
BnigB4G0002140.1 Alkaloid T3O low borderline
BnigB4G0004530.1 Alkaloid T3O medium borderline
BnigB4G0006640.1 Alkaloid T3O medium borderline