PlantSME Plant secondary metabolism enzyme database

Brassica nigra (brassica_nigra)

Imported from atlas release summary for Brassica nigra.

2566
Candidate Protein Records
2043
Pathway-Level Records
5164
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 641 19 BAHD (288) View species results
Phenylpropanoid pathway 428 12 POD (188) View species results
Alkaloid pathway 409 20 7DLGT (76) View species results
Flavonoid pathway 260 12 UFGT (169) View species results
Rosmarinic acid pathway 180 7 C4H (80) View species results
Steroid pathway 125 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2026 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
BnigB5G0037590.1 Rosmarinic Acid C4H low borderline
BnigB5G0039320.1 Rosmarinic Acid C4H low borderline
BnigB5G0044880.1 Rosmarinic Acid C4H medium pass
BnigB5G0045510.1 Rosmarinic Acid C4H medium pass
BnigB5G0045530.1 Rosmarinic Acid C4H low borderline
BnigB5G0045700.1 Rosmarinic Acid C4H low borderline
BnigB5G0046220.1 Rosmarinic Acid C4H low borderline
BnigB5G0048280.1 Rosmarinic Acid C4H low borderline
BnigB5G0048290.1 Rosmarinic Acid C4H low borderline
BnigB5G0048310.1 Rosmarinic Acid C4H low borderline
BnigB5G0050130.1 Rosmarinic Acid C4H low borderline
BnigB5G0050140.1 Rosmarinic Acid C4H low borderline
BnigB5G0050150.1 Rosmarinic Acid C4H low borderline
BnigB5G0050160.1 Rosmarinic Acid C4H low borderline
BnigB5G0050170.1 Rosmarinic Acid C4H low borderline
BnigB5G0050180.1 Rosmarinic Acid C4H low borderline
BnigB5G0050190.1 Rosmarinic Acid C4H medium pass
BnigB6G0000010.1 Rosmarinic Acid C4H low borderline
BnigB6G0011920.1 Rosmarinic Acid C4H medium pass
BnigB6G0011930.1 Rosmarinic Acid C4H medium pass
BnigB6G0016720.1 Rosmarinic Acid C4H low borderline
BnigB6G0016750.1 Rosmarinic Acid C4H low borderline
BnigB6G0016760.1 Rosmarinic Acid C4H low borderline
BnigB6G0018660.1 Rosmarinic Acid C4H low borderline
BnigB6G0023200.1 Rosmarinic Acid C4H medium pass
BnigB6G0024480.1 Rosmarinic Acid C4H low borderline
BnigB6G0026770.1 Rosmarinic Acid C4H low borderline
BnigB6G0029600.1 Rosmarinic Acid C4H low borderline
BnigB6G0032590.1 Rosmarinic Acid C4H low borderline
BnigB6G0032790.1 Rosmarinic Acid C4H low borderline
BnigB6G0032800.1 Rosmarinic Acid C4H low borderline
BnigB6G0032810.1 Rosmarinic Acid C4H low borderline
BnigB6G0032820.1 Rosmarinic Acid C4H low borderline
BnigB6G0032830.1 Rosmarinic Acid C4H medium pass
BnigB6G0032840.1 Rosmarinic Acid C4H medium pass
BnigB6G0032850.1 Rosmarinic Acid C4H medium pass
BnigB6G0032860.1 Rosmarinic Acid C4H low borderline
BnigB6G0032870.1 Rosmarinic Acid C4H low borderline
BnigB6G0032880.1 Rosmarinic Acid C4H low borderline
BnigB6G0032890.1 Rosmarinic Acid C4H medium pass
BnigB6G0033810.1 Rosmarinic Acid C4H medium pass
BnigB6G0033820.1 Rosmarinic Acid C4H medium pass
BnigB6G0033830.1 Rosmarinic Acid C4H medium pass
BnigB6G0034940.1 Rosmarinic Acid C4H low borderline
BnigB6G0034970.1 Rosmarinic Acid C4H low borderline
BnigB6G0035940.1 Rosmarinic Acid C4H low borderline
BnigB6G0035990.1 Rosmarinic Acid C4H low borderline
BnigB6G0036120.1 Rosmarinic Acid C4H medium pass
BnigB6G0038520.1 Rosmarinic Acid C4H low borderline
BnigB7G0010100.1 Rosmarinic Acid C4H low borderline